miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23277 5' -55.2 NC_005259.1 + 66644 0.66 0.81346
Target:  5'- cCGCuCGGAUugcugcCGGUCGGCggUGcUGCg -3'
miRNA:   3'- cGCG-GCCUGu-----GCCAGUCGuaGCaACG- -5'
23277 5' -55.2 NC_005259.1 + 66221 0.67 0.714503
Target:  5'- cGCGCCGacgcacACGCGGUCGuGCAgccaUCGacGCa -3'
miRNA:   3'- -CGCGGCc-----UGUGCCAGU-CGU----AGCaaCG- -5'
23277 5' -55.2 NC_005259.1 + 65100 0.71 0.533571
Target:  5'- -gGCuCGuGGCACGGUCAGUgcgucaccGUCGgcGCa -3'
miRNA:   3'- cgCG-GC-CUGUGCCAGUCG--------UAGCaaCG- -5'
23277 5' -55.2 NC_005259.1 + 63750 0.66 0.804215
Target:  5'- uCGgCGGGCACGaaCAGCAcacCGUUGUu -3'
miRNA:   3'- cGCgGCCUGUGCcaGUCGUa--GCAACG- -5'
23277 5' -55.2 NC_005259.1 + 61066 0.76 0.258658
Target:  5'- uGUGCCGGGCAuCGGcauaGGCGUCGUcgGCc -3'
miRNA:   3'- -CGCGGCCUGU-GCCag--UCGUAGCAa-CG- -5'
23277 5' -55.2 NC_005259.1 + 60531 0.69 0.650718
Target:  5'- -gGCCGGGC-CGGgacgCAGCcgcUCGUcgGCa -3'
miRNA:   3'- cgCGGCCUGuGCCa---GUCGu--AGCAa-CG- -5'
23277 5' -55.2 NC_005259.1 + 58933 0.74 0.330287
Target:  5'- uCGgCGGGCGCGGUggCAGCGUCGgccuugGCc -3'
miRNA:   3'- cGCgGCCUGUGCCA--GUCGUAGCaa----CG- -5'
23277 5' -55.2 NC_005259.1 + 54025 0.66 0.804215
Target:  5'- aCGCuCGGGCGCGGUgCGGUcugCGaaGCa -3'
miRNA:   3'- cGCG-GCCUGUGCCA-GUCGua-GCaaCG- -5'
23277 5' -55.2 NC_005259.1 + 53948 0.7 0.541911
Target:  5'- aGCGuuucccacCCGGugaACAUGGUCAGCAggccgguauugaCGUUGCa -3'
miRNA:   3'- -CGC--------GGCC---UGUGCCAGUCGUa-----------GCAACG- -5'
23277 5' -55.2 NC_005259.1 + 51673 0.67 0.745489
Target:  5'- cGCGUCGGGCACGGgc-GCG-CGaUGg -3'
miRNA:   3'- -CGCGGCCUGUGCCaguCGUaGCaACg -5'
23277 5' -55.2 NC_005259.1 + 49585 0.7 0.575669
Target:  5'- cCGgCGGGCGgGGUCAGCAccUCGaccucggGCa -3'
miRNA:   3'- cGCgGCCUGUgCCAGUCGU--AGCaa-----CG- -5'
23277 5' -55.2 NC_005259.1 + 48471 0.66 0.804215
Target:  5'- cGCGCCGGGuCGCG-UCGGCcuguuccUCGacGCg -3'
miRNA:   3'- -CGCGGCCU-GUGCcAGUCGu------AGCaaCG- -5'
23277 5' -55.2 NC_005259.1 + 47531 0.67 0.724923
Target:  5'- cGUGCCGaAUGCGGagaUCAGCgGUCGaaUUGCg -3'
miRNA:   3'- -CGCGGCcUGUGCC---AGUCG-UAGC--AACG- -5'
23277 5' -55.2 NC_005259.1 + 46587 0.66 0.81346
Target:  5'- cGCGCCGcccGAgGCGaG-CAGCgcGUCGUUGg -3'
miRNA:   3'- -CGCGGC---CUgUGC-CaGUCG--UAGCAACg -5'
23277 5' -55.2 NC_005259.1 + 45627 0.69 0.61847
Target:  5'- cCGCCGGGC-CGGgCAGCG-CGccggUGCc -3'
miRNA:   3'- cGCGGCCUGuGCCaGUCGUaGCa---ACG- -5'
23277 5' -55.2 NC_005259.1 + 43783 0.66 0.785219
Target:  5'- uCGCCGGGCAUGaG-CAGCG-CGg-GCa -3'
miRNA:   3'- cGCGGCCUGUGC-CaGUCGUaGCaaCG- -5'
23277 5' -55.2 NC_005259.1 + 41570 0.66 0.779398
Target:  5'- cCGCCGGAagUauccguugagcgugaGCGGUCGcGCGUCGgUGUu -3'
miRNA:   3'- cGCGGCCU--G---------------UGCCAGU-CGUAGCaACG- -5'
23277 5' -55.2 NC_005259.1 + 40047 0.67 0.755612
Target:  5'- uCGCCGGugAUcgGGUCGGUcgCGaUGa -3'
miRNA:   3'- cGCGGCCugUG--CCAGUCGuaGCaACg -5'
23277 5' -55.2 NC_005259.1 + 39420 0.67 0.724923
Target:  5'- gGUGCCGGACACcGUCAaugaGUCGa-GCg -3'
miRNA:   3'- -CGCGGCCUGUGcCAGUcg--UAGCaaCG- -5'
23277 5' -55.2 NC_005259.1 + 37958 0.67 0.755612
Target:  5'- cCGuUCGGGCucuUGGUCGGCAgugcgUCGUacUGCg -3'
miRNA:   3'- cGC-GGCCUGu--GCCAGUCGU-----AGCA--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.