Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23277 | 5' | -55.2 | NC_005259.1 | + | 26832 | 0.67 | 0.714503 |
Target: 5'- gGUGCCGGG-GCGGUCuGC-UCGg-GCa -3' miRNA: 3'- -CGCGGCCUgUGCCAGuCGuAGCaaCG- -5' |
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23277 | 5' | -55.2 | NC_005259.1 | + | 5260 | 0.68 | 0.69344 |
Target: 5'- -gGCgGGGacUACGGUCAGUgucccGUCGUUGa -3' miRNA: 3'- cgCGgCCU--GUGCCAGUCG-----UAGCAACg -5' |
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23277 | 5' | -55.2 | NC_005259.1 | + | 17336 | 0.68 | 0.667874 |
Target: 5'- uGUGCCGGuCAacgucgccgucgaGGUCGGCGgcUCGgcGCu -3' miRNA: 3'- -CGCGGCCuGUg------------CCAGUCGU--AGCaaCG- -5' |
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23277 | 5' | -55.2 | NC_005259.1 | + | 23307 | 0.68 | 0.661448 |
Target: 5'- gGgGuCCGG-CGCGGUCGGUGUCGccgaGCc -3' miRNA: 3'- -CgC-GGCCuGUGCCAGUCGUAGCaa--CG- -5' |
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23277 | 5' | -55.2 | NC_005259.1 | + | 60531 | 0.69 | 0.650718 |
Target: 5'- -gGCCGGGC-CGGgacgCAGCcgcUCGUcgGCa -3' miRNA: 3'- cgCGGCCUGuGCCa---GUCGu--AGCAa-CG- -5' |
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23277 | 5' | -55.2 | NC_005259.1 | + | 26406 | 0.69 | 0.639973 |
Target: 5'- aCGCCGGGCGCGG-CGGUGcCGccGUa -3' miRNA: 3'- cGCGGCCUGUGCCaGUCGUaGCaaCG- -5' |
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23277 | 5' | -55.2 | NC_005259.1 | + | 45627 | 0.69 | 0.61847 |
Target: 5'- cCGCCGGGC-CGGgCAGCG-CGccggUGCc -3' miRNA: 3'- cGCGGCCUGuGCCaGUCGUaGCa---ACG- -5' |
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23277 | 5' | -55.2 | NC_005259.1 | + | 49585 | 0.7 | 0.575669 |
Target: 5'- cCGgCGGGCGgGGUCAGCAccUCGaccucggGCa -3' miRNA: 3'- cGCgGCCUGUgCCAGUCGU--AGCaa-----CG- -5' |
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23277 | 5' | -55.2 | NC_005259.1 | + | 28003 | 0.7 | 0.575669 |
Target: 5'- gGUGCCgGGGCGgGGUCGcCGggGUUGCg -3' miRNA: 3'- -CGCGG-CCUGUgCCAGUcGUagCAACG- -5' |
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23277 | 5' | -55.2 | NC_005259.1 | + | 26615 | 0.7 | 0.554502 |
Target: 5'- cGCGCCGGAC-CGG-UAGCcgauAUCGaugGCc -3' miRNA: 3'- -CGCGGCCUGuGCCaGUCG----UAGCaa-CG- -5' |
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23277 | 5' | -55.2 | NC_005259.1 | + | 53948 | 0.7 | 0.541911 |
Target: 5'- aGCGuuucccacCCGGugaACAUGGUCAGCAggccgguauugaCGUUGCa -3' miRNA: 3'- -CGC--------GGCC---UGUGCCAGUCGUa-----------GCAACG- -5' |
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23277 | 5' | -55.2 | NC_005259.1 | + | 65100 | 0.71 | 0.533571 |
Target: 5'- -gGCuCGuGGCACGGUCAGUgcgucaccGUCGgcGCa -3' miRNA: 3'- cgCG-GC-CUGUGCCAGUCG--------UAGCaaCG- -5' |
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23277 | 5' | -55.2 | NC_005259.1 | + | 16436 | 0.71 | 0.501714 |
Target: 5'- aGCGgcccaaaCCGGGCACcGUCGGCAUCGg--- -3' miRNA: 3'- -CGC-------GGCCUGUGcCAGUCGUAGCaacg -5' |
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23277 | 5' | -55.2 | NC_005259.1 | + | 11011 | 0.72 | 0.462878 |
Target: 5'- cGCGCCGGACGCGccgaGGCAggaGUUcGCc -3' miRNA: 3'- -CGCGGCCUGUGCcag-UCGUag-CAA-CG- -5' |
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23277 | 5' | -55.2 | NC_005259.1 | + | 32922 | 0.73 | 0.415512 |
Target: 5'- cCGCuCGGGCGCGG-CGGUAUCGUc-- -3' miRNA: 3'- cGCG-GCCUGUGCCaGUCGUAGCAacg -5' |
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23277 | 5' | -55.2 | NC_005259.1 | + | 8819 | 0.74 | 0.330287 |
Target: 5'- cGCGCCGGGC-CGGUgAGUugacgCGcUGCg -3' miRNA: 3'- -CGCGGCCUGuGCCAgUCGua---GCaACG- -5' |
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23277 | 5' | -55.2 | NC_005259.1 | + | 58933 | 0.74 | 0.330287 |
Target: 5'- uCGgCGGGCGCGGUggCAGCGUCGgccuugGCc -3' miRNA: 3'- cGCgGCCUGUGCCA--GUCGUAGCaa----CG- -5' |
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23277 | 5' | -55.2 | NC_005259.1 | + | 61066 | 0.76 | 0.258658 |
Target: 5'- uGUGCCGGGCAuCGGcauaGGCGUCGUcgGCc -3' miRNA: 3'- -CGCGGCCUGU-GCCag--UCGUAGCAa-CG- -5' |
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23277 | 5' | -55.2 | NC_005259.1 | + | 27300 | 1.15 | 0.000609 |
Target: 5'- cGCGCCGGACACGGUCAGCAUCGUUGCg -3' miRNA: 3'- -CGCGGCCUGUGCCAGUCGUAGCAACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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