miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23279 5' -55.6 NC_005259.1 + 36169 0.68 0.61767
Target:  5'- gACGAcCUUGCCGAGGUcgagAGCCuGCg -3'
miRNA:   3'- gUGCUaGAGUGGCUCCGaca-UCGG-CG- -5'
23279 5' -55.6 NC_005259.1 + 33384 0.69 0.596125
Target:  5'- -cCGGUC-CGCCGAGcGCgacgAGCCGUg -3'
miRNA:   3'- guGCUAGaGUGGCUC-CGaca-UCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 19437 0.69 0.596125
Target:  5'- -uCGAcCUCGCCccGAGGCUGUcaucgAGaCCGCc -3'
miRNA:   3'- guGCUaGAGUGG--CUCCGACA-----UC-GGCG- -5'
23279 5' -55.6 NC_005259.1 + 42682 0.69 0.585392
Target:  5'- gGCGAUCUCGaccCCGuugaGGGCgaaGUAGCCa- -3'
miRNA:   3'- gUGCUAGAGU---GGC----UCCGa--CAUCGGcg -5'
23279 5' -55.6 NC_005259.1 + 16689 0.69 0.585392
Target:  5'- gGCGAUCcugggCACCGAGGUgaccGCCGa -3'
miRNA:   3'- gUGCUAGa----GUGGCUCCGacauCGGCg -5'
23279 5' -55.6 NC_005259.1 + 28011 0.69 0.584321
Target:  5'- gGCGGggUCGCCGGGGUUGcgcgcguUGGCCaGCc -3'
miRNA:   3'- gUGCUagAGUGGCUCCGAC-------AUCGG-CG- -5'
23279 5' -55.6 NC_005259.1 + 60677 0.69 0.574697
Target:  5'- aCGCGuUCUgCACCGA-GCgGUGGCaCGCa -3'
miRNA:   3'- -GUGCuAGA-GUGGCUcCGaCAUCG-GCG- -5'
23279 5' -55.6 NC_005259.1 + 8636 0.69 0.574697
Target:  5'- gGCGAgaauggCggGCaCGAGGCUGUGGUCGg -3'
miRNA:   3'- gUGCUa-----GagUG-GCUCCGACAUCGGCg -5'
23279 5' -55.6 NC_005259.1 + 12044 0.69 0.574697
Target:  5'- -cCGGUaCUCACCGAGGCcg-AGCUcuGCg -3'
miRNA:   3'- guGCUA-GAGUGGCUCCGacaUCGG--CG- -5'
23279 5' -55.6 NC_005259.1 + 49067 0.69 0.574697
Target:  5'- gGCGGUUggcgcaagggaUCGCuCGAGGgUGUcauGGCCGCc -3'
miRNA:   3'- gUGCUAG-----------AGUG-GCUCCgACA---UCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 54095 0.7 0.542913
Target:  5'- uCGCGca-UCACCggggucaacguGAGGCUGacaUAGCCGCu -3'
miRNA:   3'- -GUGCuagAGUGG-----------CUCCGAC---AUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 42932 0.71 0.491358
Target:  5'- gCAUGAggccCUCGCCGuGGGCga-GGCCGCc -3'
miRNA:   3'- -GUGCUa---GAGUGGC-UCCGacaUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 45395 0.71 0.491358
Target:  5'- uCGgGGUCgcCGCCGAGcgcGCUGaUGGCCGCc -3'
miRNA:   3'- -GUgCUAGa-GUGGCUC---CGAC-AUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 30540 0.71 0.491358
Target:  5'- gCAUGAUCauggcCACCGAgcGGUUGUugacgcccuuGGCCGCa -3'
miRNA:   3'- -GUGCUAGa----GUGGCU--CCGACA----------UCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 38650 0.71 0.477323
Target:  5'- gGCGAaCUCGCCGAaaucgaccaccucGCUGuUGGCCGCc -3'
miRNA:   3'- gUGCUaGAGUGGCUc------------CGAC-AUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 14169 0.71 0.442185
Target:  5'- --gGAUCUCGCCG-GGCggGUGGCaacCGCu -3'
miRNA:   3'- gugCUAGAGUGGCuCCGa-CAUCG---GCG- -5'
23279 5' -55.6 NC_005259.1 + 21375 0.73 0.387043
Target:  5'- aACGAUCcagUCGCCGAGGCgGUGcaaCGCg -3'
miRNA:   3'- gUGCUAG---AGUGGCUCCGaCAUcg-GCG- -5'
23279 5' -55.6 NC_005259.1 + 48665 0.73 0.387043
Target:  5'- -uUGAUCUCAaccCCGAGGCUGauuuuGCCGa -3'
miRNA:   3'- guGCUAGAGU---GGCUCCGACau---CGGCg -5'
23279 5' -55.6 NC_005259.1 + 30609 0.73 0.375706
Target:  5'- cCACGGUCUCGCCGuuucuGGUgaucgagugaaUGUcgccgaacuguuccAGCCGCa -3'
miRNA:   3'- -GUGCUAGAGUGGCu----CCG-----------ACA--------------UCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 6102 0.73 0.369696
Target:  5'- -cCGAgaUCGCCGAGGCcGaGGCCGCc -3'
miRNA:   3'- guGCUagAGUGGCUCCGaCaUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.