Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23279 | 5' | -55.6 | NC_005259.1 | + | 60677 | 0.69 | 0.574697 |
Target: 5'- aCGCGuUCUgCACCGA-GCgGUGGCaCGCa -3' miRNA: 3'- -GUGCuAGA-GUGGCUcCGaCAUCG-GCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 12044 | 0.69 | 0.574697 |
Target: 5'- -cCGGUaCUCACCGAGGCcg-AGCUcuGCg -3' miRNA: 3'- guGCUA-GAGUGGCUCCGacaUCGG--CG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 49067 | 0.69 | 0.574697 |
Target: 5'- gGCGGUUggcgcaagggaUCGCuCGAGGgUGUcauGGCCGCc -3' miRNA: 3'- gUGCUAG-----------AGUG-GCUCCgACA---UCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 8636 | 0.69 | 0.574697 |
Target: 5'- gGCGAgaauggCggGCaCGAGGCUGUGGUCGg -3' miRNA: 3'- gUGCUa-----GagUG-GCUCCGACAUCGGCg -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 28011 | 0.69 | 0.584321 |
Target: 5'- gGCGGggUCGCCGGGGUUGcgcgcguUGGCCaGCc -3' miRNA: 3'- gUGCUagAGUGGCUCCGAC-------AUCGG-CG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 16689 | 0.69 | 0.585392 |
Target: 5'- gGCGAUCcugggCACCGAGGUgaccGCCGa -3' miRNA: 3'- gUGCUAGa----GUGGCUCCGacauCGGCg -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 42682 | 0.69 | 0.585392 |
Target: 5'- gGCGAUCUCGaccCCGuugaGGGCgaaGUAGCCa- -3' miRNA: 3'- gUGCUAGAGU---GGC----UCCGa--CAUCGGcg -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 19437 | 0.69 | 0.596125 |
Target: 5'- -uCGAcCUCGCCccGAGGCUGUcaucgAGaCCGCc -3' miRNA: 3'- guGCUaGAGUGG--CUCCGACA-----UC-GGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 33384 | 0.69 | 0.596125 |
Target: 5'- -cCGGUC-CGCCGAGcGCgacgAGCCGUg -3' miRNA: 3'- guGCUAGaGUGGCUC-CGaca-UCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 36169 | 0.68 | 0.61767 |
Target: 5'- gACGAcCUUGCCGAGGUcgagAGCCuGCg -3' miRNA: 3'- gUGCUaGAGUGGCUCCGaca-UCGG-CG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 15361 | 0.68 | 0.621987 |
Target: 5'- --aGuAUCUCGCCGAucugGGCgagcugccgcaaccGUGGCCGCg -3' miRNA: 3'- gugC-UAGAGUGGCU----CCGa-------------CAUCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 67943 | 0.67 | 0.671584 |
Target: 5'- gAUGAUCUUGCggugCGGGuuguGCUGUAGCgCGCg -3' miRNA: 3'- gUGCUAGAGUG----GCUC----CGACAUCG-GCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 40139 | 0.67 | 0.692968 |
Target: 5'- gGCGAgCUCGCCGucGGUUGUcgguGcCCGCc -3' miRNA: 3'- gUGCUaGAGUGGCu-CCGACAu---C-GGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 45308 | 0.67 | 0.692968 |
Target: 5'- -cCGGUgaCGCCGAGGCc---GCCGCc -3' miRNA: 3'- guGCUAgaGUGGCUCCGacauCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 27891 | 0.67 | 0.70358 |
Target: 5'- cCACGAUC-CACCuGGGGUcGccgAGaCCGCg -3' miRNA: 3'- -GUGCUAGaGUGG-CUCCGaCa--UC-GGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 60884 | 0.67 | 0.70358 |
Target: 5'- gACGGUgUCACCGAaugcgGGCU-UGGCCa- -3' miRNA: 3'- gUGCUAgAGUGGCU-----CCGAcAUCGGcg -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 60764 | 0.67 | 0.714125 |
Target: 5'- -uCGG-CUCGgCGAGGUUG-GGCUGCg -3' miRNA: 3'- guGCUaGAGUgGCUCCGACaUCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 3978 | 0.67 | 0.724593 |
Target: 5'- aGCGGUCccgcgagCACgCGAuGGCg--GGCCGCg -3' miRNA: 3'- gUGCUAGa------GUG-GCU-CCGacaUCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 39060 | 0.67 | 0.724593 |
Target: 5'- gGCGAUgUUGCCGAGcuuGCUGgcGUCGa -3' miRNA: 3'- gUGCUAgAGUGGCUC---CGACauCGGCg -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 48422 | 0.66 | 0.734972 |
Target: 5'- cCGCGAcCgccacCACCGAGGCgcgagGcAGCgGCa -3' miRNA: 3'- -GUGCUaGa----GUGGCUCCGa----CaUCGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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