miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23279 5' -55.6 NC_005259.1 + 26548 1.1 0.000999
Target:  5'- cCACGAUCUCACCGAGGCUGUAGCCGCc -3'
miRNA:   3'- -GUGCUAGAGUGGCUCCGACAUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 21607 0.78 0.169549
Target:  5'- aGCuGAUCUacacCACCGAGGCUGU-GUCGCg -3'
miRNA:   3'- gUG-CUAGA----GUGGCUCCGACAuCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 28946 0.77 0.198738
Target:  5'- gCACGAUCcugcgccgcaUCGCCGAGGUcgGUgccgaGGCCGCg -3'
miRNA:   3'- -GUGCUAG----------AGUGGCUCCGa-CA-----UCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 60206 0.76 0.243759
Target:  5'- cCACGAUCUCGCCGAucucgucGGCgcugAGCuCGCu -3'
miRNA:   3'- -GUGCUAGAGUGGCU-------CCGaca-UCG-GCG- -5'
23279 5' -55.6 NC_005259.1 + 33590 0.75 0.270306
Target:  5'- uCGCGggC-CACCGAGGCgcgGUcgAGCUGCa -3'
miRNA:   3'- -GUGCuaGaGUGGCUCCGa--CA--UCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 62583 0.75 0.277124
Target:  5'- gACGAcCUCGCCcucgaugaGAGGCUGUGugagcugacGCCGCa -3'
miRNA:   3'- gUGCUaGAGUGG--------CUCCGACAU---------CGGCG- -5'
23279 5' -55.6 NC_005259.1 + 10758 0.74 0.316316
Target:  5'- gGCGAUCaucaugucgggcgggUCAUCGAGGUg--GGCCGCg -3'
miRNA:   3'- gUGCUAG---------------AGUGGCUCCGacaUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 20648 0.74 0.318612
Target:  5'- aCACGuUCggcggCACCGGGGCcgaggacgccaugaUGUGGUCGCa -3'
miRNA:   3'- -GUGCuAGa----GUGGCUCCG--------------ACAUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 22551 0.74 0.328704
Target:  5'- -cCGAcCUCGCCGAGGUcaUGgaAGCCGCc -3'
miRNA:   3'- guGCUaGAGUGGCUCCG--ACa-UCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 4883 0.73 0.361223
Target:  5'- cCGCGAcaaCUCACCGAGGgUGaucggaugAGCUGCu -3'
miRNA:   3'- -GUGCUa--GAGUGGCUCCgACa-------UCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 6102 0.73 0.369696
Target:  5'- -cCGAgaUCGCCGAGGCcGaGGCCGCc -3'
miRNA:   3'- guGCUagAGUGGCUCCGaCaUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 30609 0.73 0.375706
Target:  5'- cCACGGUCUCGCCGuuucuGGUgaucgagugaaUGUcgccgaacuguuccAGCCGCa -3'
miRNA:   3'- -GUGCUAGAGUGGCu----CCG-----------ACA--------------UCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 48665 0.73 0.387043
Target:  5'- -uUGAUCUCAaccCCGAGGCUGauuuuGCCGa -3'
miRNA:   3'- guGCUAGAGU---GGCUCCGACau---CGGCg -5'
23279 5' -55.6 NC_005259.1 + 21375 0.73 0.387043
Target:  5'- aACGAUCcagUCGCCGAGGCgGUGcaaCGCg -3'
miRNA:   3'- gUGCUAG---AGUGGCUCCGaCAUcg-GCG- -5'
23279 5' -55.6 NC_005259.1 + 14169 0.71 0.442185
Target:  5'- --gGAUCUCGCCG-GGCggGUGGCaacCGCu -3'
miRNA:   3'- gugCUAGAGUGGCuCCGa-CAUCG---GCG- -5'
23279 5' -55.6 NC_005259.1 + 38650 0.71 0.477323
Target:  5'- gGCGAaCUCGCCGAaaucgaccaccucGCUGuUGGCCGCc -3'
miRNA:   3'- gUGCUaGAGUGGCUc------------CGAC-AUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 45395 0.71 0.491358
Target:  5'- uCGgGGUCgcCGCCGAGcgcGCUGaUGGCCGCc -3'
miRNA:   3'- -GUgCUAGa-GUGGCUC---CGAC-AUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 42932 0.71 0.491358
Target:  5'- gCAUGAggccCUCGCCGuGGGCga-GGCCGCc -3'
miRNA:   3'- -GUGCUa---GAGUGGC-UCCGacaUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 30540 0.71 0.491358
Target:  5'- gCAUGAUCauggcCACCGAgcGGUUGUugacgcccuuGGCCGCa -3'
miRNA:   3'- -GUGCUAGa----GUGGCU--CCGACA----------UCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 54095 0.7 0.542913
Target:  5'- uCGCGca-UCACCggggucaacguGAGGCUGacaUAGCCGCu -3'
miRNA:   3'- -GUGCuagAGUGG-----------CUCCGAC---AUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.