miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23279 5' -55.6 NC_005259.1 + 1170 0.66 0.775384
Target:  5'- -uCGAUCcCGCCGAcaucGUUG-AGCCGCu -3'
miRNA:   3'- guGCUAGaGUGGCUc---CGACaUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 3978 0.67 0.724593
Target:  5'- aGCGGUCccgcgagCACgCGAuGGCg--GGCCGCg -3'
miRNA:   3'- gUGCUAGa------GUG-GCU-CCGacaUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 4883 0.73 0.361223
Target:  5'- cCGCGAcaaCUCACCGAGGgUGaucggaugAGCUGCu -3'
miRNA:   3'- -GUGCUa--GAGUGGCUCCgACa-------UCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 6102 0.73 0.369696
Target:  5'- -cCGAgaUCGCCGAGGCcGaGGCCGCc -3'
miRNA:   3'- guGCUagAGUGGCUCCGaCaUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 8636 0.69 0.574697
Target:  5'- gGCGAgaauggCggGCaCGAGGCUGUGGUCGg -3'
miRNA:   3'- gUGCUa-----GagUG-GCUCCGACAUCGGCg -5'
23279 5' -55.6 NC_005259.1 + 10758 0.74 0.316316
Target:  5'- gGCGAUCaucaugucgggcgggUCAUCGAGGUg--GGCCGCg -3'
miRNA:   3'- gUGCUAG---------------AGUGGCUCCGacaUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 12044 0.69 0.574697
Target:  5'- -cCGGUaCUCACCGAGGCcg-AGCUcuGCg -3'
miRNA:   3'- guGCUA-GAGUGGCUCCGacaUCGG--CG- -5'
23279 5' -55.6 NC_005259.1 + 14169 0.71 0.442185
Target:  5'- --gGAUCUCGCCG-GGCggGUGGCaacCGCu -3'
miRNA:   3'- gugCUAGAGUGGCuCCGa-CAUCG---GCG- -5'
23279 5' -55.6 NC_005259.1 + 14726 0.66 0.745251
Target:  5'- cCGCGcUCgUCGCCGAGauguacgcGCUGgccgGGCCGg -3'
miRNA:   3'- -GUGCuAG-AGUGGCUC--------CGACa---UCGGCg -5'
23279 5' -55.6 NC_005259.1 + 15361 0.68 0.621987
Target:  5'- --aGuAUCUCGCCGAucugGGCgagcugccgcaaccGUGGCCGCg -3'
miRNA:   3'- gugC-UAGAGUGGCU----CCGa-------------CAUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 16689 0.69 0.585392
Target:  5'- gGCGAUCcugggCACCGAGGUgaccGCCGa -3'
miRNA:   3'- gUGCUAGa----GUGGCUCCGacauCGGCg -5'
23279 5' -55.6 NC_005259.1 + 19101 0.66 0.785158
Target:  5'- gCGCGAaCUCACCGGcGCUGgugugugcGUCGUg -3'
miRNA:   3'- -GUGCUaGAGUGGCUcCGACau------CGGCG- -5'
23279 5' -55.6 NC_005259.1 + 19437 0.69 0.596125
Target:  5'- -uCGAcCUCGCCccGAGGCUGUcaucgAGaCCGCc -3'
miRNA:   3'- guGCUaGAGUGG--CUCCGACA-----UC-GGCG- -5'
23279 5' -55.6 NC_005259.1 + 20648 0.74 0.318612
Target:  5'- aCACGuUCggcggCACCGGGGCcgaggacgccaugaUGUGGUCGCa -3'
miRNA:   3'- -GUGCuAGa----GUGGCUCCG--------------ACAUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 21375 0.73 0.387043
Target:  5'- aACGAUCcagUCGCCGAGGCgGUGcaaCGCg -3'
miRNA:   3'- gUGCUAG---AGUGGCUCCGaCAUcg-GCG- -5'
23279 5' -55.6 NC_005259.1 + 21607 0.78 0.169549
Target:  5'- aGCuGAUCUacacCACCGAGGCUGU-GUCGCg -3'
miRNA:   3'- gUG-CUAGA----GUGGCUCCGACAuCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 22551 0.74 0.328704
Target:  5'- -cCGAcCUCGCCGAGGUcaUGgaAGCCGCc -3'
miRNA:   3'- guGCUaGAGUGGCUCCG--ACa-UCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 26395 0.66 0.734972
Target:  5'- uCGCGAUUccgaCGCCGGGcGCggcgGU-GCCGCc -3'
miRNA:   3'- -GUGCUAGa---GUGGCUC-CGa---CAuCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 26548 1.1 0.000999
Target:  5'- cCACGAUCUCACCGAGGCUGUAGCCGCc -3'
miRNA:   3'- -GUGCUAGAGUGGCUCCGACAUCGGCG- -5'
23279 5' -55.6 NC_005259.1 + 27891 0.67 0.70358
Target:  5'- cCACGAUC-CACCuGGGGUcGccgAGaCCGCg -3'
miRNA:   3'- -GUGCUAGaGUGG-CUCCGaCa--UC-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.