Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23279 | 5' | -55.6 | NC_005259.1 | + | 54637 | 0.66 | 0.785158 |
Target: 5'- aCGCGA---CACCGAGGCaaucaGGUCGCu -3' miRNA: 3'- -GUGCUagaGUGGCUCCGaca--UCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 48665 | 0.73 | 0.387043 |
Target: 5'- -uUGAUCUCAaccCCGAGGCUGauuuuGCCGa -3' miRNA: 3'- guGCUAGAGU---GGCUCCGACau---CGGCg -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 21375 | 0.73 | 0.387043 |
Target: 5'- aACGAUCcagUCGCCGAGGCgGUGcaaCGCg -3' miRNA: 3'- gUGCUAG---AGUGGCUCCGaCAUcg-GCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 14169 | 0.71 | 0.442185 |
Target: 5'- --gGAUCUCGCCG-GGCggGUGGCaacCGCu -3' miRNA: 3'- gugCUAGAGUGGCuCCGa-CAUCG---GCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 38650 | 0.71 | 0.477323 |
Target: 5'- gGCGAaCUCGCCGAaaucgaccaccucGCUGuUGGCCGCc -3' miRNA: 3'- gUGCUaGAGUGGCUc------------CGAC-AUCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 30540 | 0.71 | 0.491358 |
Target: 5'- gCAUGAUCauggcCACCGAgcGGUUGUugacgcccuuGGCCGCa -3' miRNA: 3'- -GUGCUAGa----GUGGCU--CCGACA----------UCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 42932 | 0.71 | 0.491358 |
Target: 5'- gCAUGAggccCUCGCCGuGGGCga-GGCCGCc -3' miRNA: 3'- -GUGCUa---GAGUGGC-UCCGacaUCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 45395 | 0.71 | 0.491358 |
Target: 5'- uCGgGGUCgcCGCCGAGcgcGCUGaUGGCCGCc -3' miRNA: 3'- -GUgCUAGa-GUGGCUC---CGAC-AUCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 54095 | 0.7 | 0.542913 |
Target: 5'- uCGCGca-UCACCggggucaacguGAGGCUGacaUAGCCGCu -3' miRNA: 3'- -GUGCuagAGUGG-----------CUCCGAC---AUCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 30609 | 0.73 | 0.375706 |
Target: 5'- cCACGGUCUCGCCGuuucuGGUgaucgagugaaUGUcgccgaacuguuccAGCCGCa -3' miRNA: 3'- -GUGCUAGAGUGGCu----CCG-----------ACA--------------UCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 6102 | 0.73 | 0.369696 |
Target: 5'- -cCGAgaUCGCCGAGGCcGaGGCCGCc -3' miRNA: 3'- guGCUagAGUGGCUCCGaCaUCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 4883 | 0.73 | 0.361223 |
Target: 5'- cCGCGAcaaCUCACCGAGGgUGaucggaugAGCUGCu -3' miRNA: 3'- -GUGCUa--GAGUGGCUCCgACa-------UCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 21607 | 0.78 | 0.169549 |
Target: 5'- aGCuGAUCUacacCACCGAGGCUGU-GUCGCg -3' miRNA: 3'- gUG-CUAGA----GUGGCUCCGACAuCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 28946 | 0.77 | 0.198738 |
Target: 5'- gCACGAUCcugcgccgcaUCGCCGAGGUcgGUgccgaGGCCGCg -3' miRNA: 3'- -GUGCUAG----------AGUGGCUCCGa-CA-----UCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 60206 | 0.76 | 0.243759 |
Target: 5'- cCACGAUCUCGCCGAucucgucGGCgcugAGCuCGCu -3' miRNA: 3'- -GUGCUAGAGUGGCU-------CCGaca-UCG-GCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 33590 | 0.75 | 0.270306 |
Target: 5'- uCGCGggC-CACCGAGGCgcgGUcgAGCUGCa -3' miRNA: 3'- -GUGCuaGaGUGGCUCCGa--CA--UCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 62583 | 0.75 | 0.277124 |
Target: 5'- gACGAcCUCGCCcucgaugaGAGGCUGUGugagcugacGCCGCa -3' miRNA: 3'- gUGCUaGAGUGG--------CUCCGACAU---------CGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 10758 | 0.74 | 0.316316 |
Target: 5'- gGCGAUCaucaugucgggcgggUCAUCGAGGUg--GGCCGCg -3' miRNA: 3'- gUGCUAG---------------AGUGGCUCCGacaUCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 20648 | 0.74 | 0.318612 |
Target: 5'- aCACGuUCggcggCACCGGGGCcgaggacgccaugaUGUGGUCGCa -3' miRNA: 3'- -GUGCuAGa----GUGGCUCCG--------------ACAUCGGCG- -5' |
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23279 | 5' | -55.6 | NC_005259.1 | + | 22551 | 0.74 | 0.328704 |
Target: 5'- -cCGAcCUCGCCGAGGUcaUGgaAGCCGCc -3' miRNA: 3'- guGCUaGAGUGGCUCCG--ACa-UCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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