miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23284 3' -56.5 NC_005259.1 + 902 0.73 0.33344
Target:  5'- aACaCCGAGGugguGCC-CGGCGAUCACc -3'
miRNA:   3'- gUGgGGCUCUuu--CGGaGCCGCUAGUG- -5'
23284 3' -56.5 NC_005259.1 + 1224 0.7 0.48596
Target:  5'- uCACCgaucaCGAGGAcggcugcaagaccGGCCUCGGCaucaccucgGAUCACg -3'
miRNA:   3'- -GUGGg----GCUCUU-------------UCGGAGCCG---------CUAGUG- -5'
23284 3' -56.5 NC_005259.1 + 1292 0.68 0.601937
Target:  5'- gACCCCGAGGucGAGCuCUacGCGGUCGu -3'
miRNA:   3'- gUGGGGCUCU--UUCG-GAgcCGCUAGUg -5'
23284 3' -56.5 NC_005259.1 + 4720 0.66 0.718502
Target:  5'- cCGCgCCCGAGAAAGCCcgcaaggaccggcUCaGGcCGGUCc- -3'
miRNA:   3'- -GUG-GGGCUCUUUCGG-------------AG-CC-GCUAGug -5'
23284 3' -56.5 NC_005259.1 + 7707 0.66 0.719547
Target:  5'- cCACCaucgucugggCCGAGGGAuaccucacccGCCUCGaggacGCGGUCACc -3'
miRNA:   3'- -GUGG----------GGCUCUUU----------CGGAGC-----CGCUAGUG- -5'
23284 3' -56.5 NC_005259.1 + 8314 0.67 0.645005
Target:  5'- cCGCCuuGucGGAGCUgccgaCGGCGAUCAg -3'
miRNA:   3'- -GUGGggCucUUUCGGa----GCCGCUAGUg -5'
23284 3' -56.5 NC_005259.1 + 8378 0.77 0.176715
Target:  5'- gGCCUCGGcaucggcGAGAGCCUCGGCGAgccgggccaccUCGCu -3'
miRNA:   3'- gUGGGGCU-------CUUUCGGAGCCGCU-----------AGUG- -5'
23284 3' -56.5 NC_005259.1 + 12075 0.69 0.517469
Target:  5'- gACaCCGAGAuGGgcaCCUUGGUGGUCACg -3'
miRNA:   3'- gUGgGGCUCUuUC---GGAGCCGCUAGUG- -5'
23284 3' -56.5 NC_005259.1 + 13237 0.66 0.698507
Target:  5'- gGCCaCCGuGAGGGCCgagcaccCGGCGGUa-- -3'
miRNA:   3'- gUGG-GGCuCUUUCGGa------GCCGCUAgug -5'
23284 3' -56.5 NC_005259.1 + 17152 0.67 0.633154
Target:  5'- gCACCCCGcagaagaAGAAAGCUgacgacaaGGCGG-CGCa -3'
miRNA:   3'- -GUGGGGC-------UCUUUCGGag------CCGCUaGUG- -5'
23284 3' -56.5 NC_005259.1 + 17681 0.75 0.254643
Target:  5'- uCGCCCCGAGGGuGCCUaugaGGUugucGGUCGCg -3'
miRNA:   3'- -GUGGGGCUCUUuCGGAg---CCG----CUAGUG- -5'
23284 3' -56.5 NC_005259.1 + 22384 0.66 0.687888
Target:  5'- aAgCCCG-GucGGCCUCGGCGAc--- -3'
miRNA:   3'- gUgGGGCuCuuUCGGAGCCGCUagug -5'
23284 3' -56.5 NC_005259.1 + 24709 1.09 0.000916
Target:  5'- uCACCCCGAGAAAGCCUCGGCGAUCACg -3'
miRNA:   3'- -GUGGGGCUCUUUCGGAGCCGCUAGUG- -5'
23284 3' -56.5 NC_005259.1 + 27036 0.73 0.325589
Target:  5'- aCACCuuGAGcuuGGCCUUGGCcugagcgacGGUCACg -3'
miRNA:   3'- -GUGGggCUCuu-UCGGAGCCG---------CUAGUG- -5'
23284 3' -56.5 NC_005259.1 + 29385 0.72 0.366216
Target:  5'- cUACCcgCCGAccuacaccGAGGGCCUCGGCGAgcucgugCGCg -3'
miRNA:   3'- -GUGG--GGCU--------CUUUCGGAGCCGCUa------GUG- -5'
23284 3' -56.5 NC_005259.1 + 29915 0.67 0.621302
Target:  5'- gCugCCCGAGAccaucgacgcguGGCCgccacgCGGCccGGUCGCg -3'
miRNA:   3'- -GugGGGCUCUu-----------UCGGa-----GCCG--CUAGUG- -5'
23284 3' -56.5 NC_005259.1 + 30478 0.69 0.507211
Target:  5'- aGCCUCGAGGuAGGCCagaccCGGCGAgaccuugCGCg -3'
miRNA:   3'- gUGGGGCUCU-UUCGGa----GCCGCUa------GUG- -5'
23284 3' -56.5 NC_005259.1 + 31682 0.73 0.310302
Target:  5'- gUugCCCGAGGcauCCUCGGCGGUgACc -3'
miRNA:   3'- -GugGGGCUCUuucGGAGCCGCUAgUG- -5'
23284 3' -56.5 NC_005259.1 + 33307 0.67 0.634232
Target:  5'- gCGgCUCGAucccGCCgUCGGCGGUCACg -3'
miRNA:   3'- -GUgGGGCUcuuuCGG-AGCCGCUAGUG- -5'
23284 3' -56.5 NC_005259.1 + 36958 0.75 0.235985
Target:  5'- uGCCCgCGAGAccGCCUCGGCccgCACc -3'
miRNA:   3'- gUGGG-GCUCUuuCGGAGCCGcuaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.