miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23286 5' -61.7 NC_005259.1 + 43240 0.66 0.459774
Target:  5'- -aGCGaGCUGacgauGCCgccCgCGCCGGGUGCc -3'
miRNA:   3'- agUGCgCGAC-----CGGau-G-GCGGCCCACG- -5'
23286 5' -61.7 NC_005259.1 + 50693 0.66 0.45044
Target:  5'- -gAgGCGCUGcucgucgucgcGCUUGa-GCCGGGUGCu -3'
miRNA:   3'- agUgCGCGAC-----------CGGAUggCGGCCCACG- -5'
23286 5' -61.7 NC_005259.1 + 48171 0.66 0.45044
Target:  5'- -aAC-CGCccccGCC-GCCGCCGGGUGUc -3'
miRNA:   3'- agUGcGCGac--CGGaUGGCGGCCCACG- -5'
23286 5' -61.7 NC_005259.1 + 41373 0.66 0.454161
Target:  5'- -aGCGUGCggucgagcuUGGCCgguacccauggcgcGCCGCUcgGGGUGCc -3'
miRNA:   3'- agUGCGCG---------ACCGGa-------------UGGCGG--CCCACG- -5'
23286 5' -61.7 NC_005259.1 + 45746 0.66 0.468262
Target:  5'- --cCGCGCaccGCCUcggggaugagcacGCCcucGCCGGGUGCc -3'
miRNA:   3'- aguGCGCGac-CGGA-------------UGG---CGGCCCACG- -5'
23286 5' -61.7 NC_005259.1 + 47862 0.66 0.45044
Target:  5'- -aGCGCcuuGUUGGCCUcuuccaGCUugGCCGGGUcaGCg -3'
miRNA:   3'- agUGCG---CGACCGGA------UGG--CGGCCCA--CG- -5'
23286 5' -61.7 NC_005259.1 + 9398 0.66 0.43209
Target:  5'- gCACGCGC--GCC--CCGguaCGGGUGCg -3'
miRNA:   3'- aGUGCGCGacCGGauGGCg--GCCCACG- -5'
23286 5' -61.7 NC_005259.1 + 21952 0.66 0.441211
Target:  5'- aCugGCGCaaGGCgUGacCCGCgUGGGUGUc -3'
miRNA:   3'- aGugCGCGa-CCGgAU--GGCG-GCCCACG- -5'
23286 5' -61.7 NC_005259.1 + 4426 0.66 0.459774
Target:  5'- cCGCGCGCccgaGGUCgaGCCGCCc-GUGCg -3'
miRNA:   3'- aGUGCGCGa---CCGGa-UGGCGGccCACG- -5'
23286 5' -61.7 NC_005259.1 + 40440 0.67 0.414184
Target:  5'- gUCugGUGUgUGGCCUGCCGgUGuGGUu- -3'
miRNA:   3'- -AGugCGCG-ACCGGAUGGCgGC-CCAcg -5'
23286 5' -61.7 NC_005259.1 + 56899 0.67 0.405404
Target:  5'- aUCGCaGCG-UGGCC-GCCGCagcaGGcGUGCc -3'
miRNA:   3'- -AGUG-CGCgACCGGaUGGCGg---CC-CACG- -5'
23286 5' -61.7 NC_005259.1 + 33138 0.67 0.396742
Target:  5'- cCGCGCGUgaucuuGCCguagACCGCCugaggcaccgGGGUGUc -3'
miRNA:   3'- aGUGCGCGac----CGGa---UGGCGG----------CCCACG- -5'
23286 5' -61.7 NC_005259.1 + 37229 0.67 0.377278
Target:  5'- -gGgGCGCUGGCCcgugccggauuggcUGCCGCCGu-UGCc -3'
miRNA:   3'- agUgCGCGACCGG--------------AUGGCGGCccACG- -5'
23286 5' -61.7 NC_005259.1 + 45410 0.67 0.371483
Target:  5'- -aGCGCGCugaUGGCC-GCCGCCGc-UGCc -3'
miRNA:   3'- agUGCGCG---ACCGGaUGGCGGCccACG- -5'
23286 5' -61.7 NC_005259.1 + 46042 0.68 0.326592
Target:  5'- -uGCGUGaccucguagccgaUGGCCUugagcugcucaagcACCGCCGGG-GCg -3'
miRNA:   3'- agUGCGCg------------ACCGGA--------------UGGCGGCCCaCG- -5'
23286 5' -61.7 NC_005259.1 + 66254 0.68 0.331882
Target:  5'- aCGCaGCGC-GGCCcg-CGCCGGGcgGCg -3'
miRNA:   3'- aGUG-CGCGaCCGGaugGCGGCCCa-CG- -5'
23286 5' -61.7 NC_005259.1 + 47812 0.68 0.331882
Target:  5'- gUCGCGagaccuCGCgGGCCaccgcUGCCGCUGacGGUGCg -3'
miRNA:   3'- -AGUGC------GCGaCCGG-----AUGGCGGC--CCACG- -5'
23286 5' -61.7 NC_005259.1 + 45516 0.68 0.339548
Target:  5'- cCAcCGCGCcGGUgUugGCCGCCGuGGcUGCg -3'
miRNA:   3'- aGU-GCGCGaCCGgA--UGGCGGC-CC-ACG- -5'
23286 5' -61.7 NC_005259.1 + 53718 0.68 0.355263
Target:  5'- gUCAcCGCGCcgcugaUGGUgaUGUCGCCGGGUGUc -3'
miRNA:   3'- -AGU-GCGCG------ACCGg-AUGGCGGCCCACG- -5'
23286 5' -61.7 NC_005259.1 + 50021 0.68 0.366564
Target:  5'- aCGgGCGCUgcguaauccgcuguGGCCUcgacACCGCCccgcacgcgaaacgGGGUGUa -3'
miRNA:   3'- aGUgCGCGA--------------CCGGA----UGGCGG--------------CCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.