miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23286 5' -61.7 NC_005259.1 + 2148 0.73 0.171609
Target:  5'- gCACgGUGCUGGCCagcggcgucgaGCCGCCGGuUGCc -3'
miRNA:   3'- aGUG-CGCGACCGGa----------UGGCGGCCcACG- -5'
23286 5' -61.7 NC_005259.1 + 4426 0.66 0.459774
Target:  5'- cCGCGCGCccgaGGUCgaGCCGCCc-GUGCg -3'
miRNA:   3'- aGUGCGCGa---CCGGa-UGGCGGccCACG- -5'
23286 5' -61.7 NC_005259.1 + 5409 0.7 0.249834
Target:  5'- aUCAccCGCGCUGGCCgccaCGUCGaGGUcuGCg -3'
miRNA:   3'- -AGU--GCGCGACCGGaug-GCGGC-CCA--CG- -5'
23286 5' -61.7 NC_005259.1 + 8898 0.68 0.324344
Target:  5'- gUCACGCuC-GGCCUGCUGaCGGGccGCg -3'
miRNA:   3'- -AGUGCGcGaCCGGAUGGCgGCCCa-CG- -5'
23286 5' -61.7 NC_005259.1 + 9398 0.66 0.43209
Target:  5'- gCACGCGC--GCC--CCGguaCGGGUGCg -3'
miRNA:   3'- aGUGCGCGacCGGauGGCg--GCCCACG- -5'
23286 5' -61.7 NC_005259.1 + 9517 0.71 0.220918
Target:  5'- gUCGCGCGCgucGaCC-GCCGCCGGGUc- -3'
miRNA:   3'- -AGUGCGCGac-C-GGaUGGCGGCCCAcg -5'
23286 5' -61.7 NC_005259.1 + 9805 0.74 0.143181
Target:  5'- cUCGCGCcaCUaccGCCcgcACCGCCGGGUGCg -3'
miRNA:   3'- -AGUGCGc-GAc--CGGa--UGGCGGCCCACG- -5'
23286 5' -61.7 NC_005259.1 + 11018 0.68 0.324344
Target:  5'- -gACGCGCcgaGGCaggaguUCGCCGGGUGg -3'
miRNA:   3'- agUGCGCGa--CCGgau---GGCGGCCCACg -5'
23286 5' -61.7 NC_005259.1 + 13397 0.75 0.124592
Target:  5'- cCACGCauucGCUcGGCCUuccuggccggggucGCCGCCGGGgccGCg -3'
miRNA:   3'- aGUGCG----CGA-CCGGA--------------UGGCGGCCCa--CG- -5'
23286 5' -61.7 NC_005259.1 + 14073 0.7 0.237909
Target:  5'- gCACgGCGgUGGCCUACgugCGCagcgaggucgaGGGUGCg -3'
miRNA:   3'- aGUG-CGCgACCGGAUG---GCGg----------CCCACG- -5'
23286 5' -61.7 NC_005259.1 + 14745 0.71 0.226464
Target:  5'- gUACGCGCUGGCCgg--GCCGGuGauccUGCa -3'
miRNA:   3'- aGUGCGCGACCGGauggCGGCC-C----ACG- -5'
23286 5' -61.7 NC_005259.1 + 16499 0.69 0.305345
Target:  5'- cCGCGCGCaUGGCCgagagcgaGgCGCUgcgagcgucgcucaaGGGUGCg -3'
miRNA:   3'- aGUGCGCG-ACCGGa-------UgGCGG---------------CCCACG- -5'
23286 5' -61.7 NC_005259.1 + 19706 0.73 0.163007
Target:  5'- cUCGCaCGUUGG-CUGCCGCCGaGGUGa -3'
miRNA:   3'- -AGUGcGCGACCgGAUGGCGGC-CCACg -5'
23286 5' -61.7 NC_005259.1 + 21952 0.66 0.441211
Target:  5'- aCugGCGCaaGGCgUGacCCGCgUGGGUGUc -3'
miRNA:   3'- aGugCGCGa-CCGgAU--GGCG-GCCCACG- -5'
23286 5' -61.7 NC_005259.1 + 24336 1.11 0.000256
Target:  5'- cUCACGCGCUGGCCUACCGCCGGGUGCu -3'
miRNA:   3'- -AGUGCGCGACCGGAUGGCGGCCCACG- -5'
23286 5' -61.7 NC_005259.1 + 25498 0.68 0.36331
Target:  5'- cUCGCGCGUgagggcaaaaaGGCCcucgACCGUggcaucgcgUGGGUGCu -3'
miRNA:   3'- -AGUGCGCGa----------CCGGa---UGGCG---------GCCCACG- -5'
23286 5' -61.7 NC_005259.1 + 26031 0.75 0.125582
Target:  5'- -aGCGgGUUGGCCagcagcGCCGCCGGGUugGCc -3'
miRNA:   3'- agUGCgCGACCGGa-----UGGCGGCCCA--CG- -5'
23286 5' -61.7 NC_005259.1 + 27856 0.7 0.268642
Target:  5'- gUCGCGCGCcGuaCgACCGCCcucuuGGGUGUg -3'
miRNA:   3'- -AGUGCGCGaCcgGaUGGCGG-----CCCACG- -5'
23286 5' -61.7 NC_005259.1 + 28029 0.71 0.219823
Target:  5'- gCGCGCGUUGGCCagccacggcuugggaUcgaucugcgaccccuGCCGCCacacggugGGGUGCa -3'
miRNA:   3'- aGUGCGCGACCGG---------------A---------------UGGCGG--------CCCACG- -5'
23286 5' -61.7 NC_005259.1 + 33138 0.67 0.396742
Target:  5'- cCGCGCGUgaucuuGCCguagACCGCCugaggcaccgGGGUGUc -3'
miRNA:   3'- aGUGCGCGac----CGGa---UGGCGG----------CCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.