miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23288 3' -62.6 NC_005259.1 + 38940 0.66 0.426187
Target:  5'- gCUGuGCCCGgugCCGCuGCCGCcgagAGCCUGc -3'
miRNA:   3'- -GGC-CGGGUg--GGCGuCGGCG----UUGGACa -5'
23288 3' -62.6 NC_005259.1 + 46773 0.66 0.426187
Target:  5'- gCCGacaGCCgCGCCCGCcgGGCCGaacaccgAGCCUGc -3'
miRNA:   3'- -GGC---CGG-GUGGGCG--UCGGCg------UUGGACa -5'
23288 3' -62.6 NC_005259.1 + 66261 0.66 0.417294
Target:  5'- gCGGCCCGCgCCG-GGCgGCGGCUc-- -3'
miRNA:   3'- gGCCGGGUG-GGCgUCGgCGUUGGaca -5'
23288 3' -62.6 NC_005259.1 + 5516 0.66 0.417294
Target:  5'- gCGcGCCgCGCCCGCaAGCUGUGGCUg-- -3'
miRNA:   3'- gGC-CGG-GUGGGCG-UCGGCGUUGGaca -5'
23288 3' -62.6 NC_005259.1 + 51568 0.66 0.417294
Target:  5'- -gGGCCaacgauCCgGCAGCCGguGCCg-- -3'
miRNA:   3'- ggCCGGgu----GGgCGUCGGCguUGGaca -5'
23288 3' -62.6 NC_005259.1 + 20998 0.66 0.417294
Target:  5'- -gGGCCUACUCG-GGCgGCGACcCUGa -3'
miRNA:   3'- ggCCGGGUGGGCgUCGgCGUUG-GACa -5'
23288 3' -62.6 NC_005259.1 + 33083 0.66 0.408514
Target:  5'- gCUGG-CCACCUGUAGguaggcCCGCGagcguGCCUGUa -3'
miRNA:   3'- -GGCCgGGUGGGCGUC------GGCGU-----UGGACA- -5'
23288 3' -62.6 NC_005259.1 + 26133 0.66 0.408514
Target:  5'- gCCGGUCCgACgCCGCcgaGGCCgaGCAGCCcGa -3'
miRNA:   3'- -GGCCGGG-UG-GGCG---UCGG--CGUUGGaCa -5'
23288 3' -62.6 NC_005259.1 + 46378 0.67 0.374578
Target:  5'- cCCGGcCCCAUCucaCGCAGCCGCG-Cg-GUg -3'
miRNA:   3'- -GGCC-GGGUGG---GCGUCGGCGUuGgaCA- -5'
23288 3' -62.6 NC_005259.1 + 37199 0.67 0.374578
Target:  5'- gCGGCCCuugccgccaCCGCcGCCGCcGCCgGg -3'
miRNA:   3'- gGCCGGGug-------GGCGuCGGCGuUGGaCa -5'
23288 3' -62.6 NC_005259.1 + 57430 0.67 0.374578
Target:  5'- aCCGGCUCGCUuaCGCGGCgagguuggUGCGACgCUGc -3'
miRNA:   3'- -GGCCGGGUGG--GCGUCG--------GCGUUG-GACa -5'
23288 3' -62.6 NC_005259.1 + 55810 0.67 0.366397
Target:  5'- aCGGCUCACCCucgggguagGCcGCCGCGuCCUc- -3'
miRNA:   3'- gGCCGGGUGGG---------CGuCGGCGUuGGAca -5'
23288 3' -62.6 NC_005259.1 + 65984 0.67 0.366397
Target:  5'- -aGGCgCGCCgaGCAGCCGCucGACgUGg -3'
miRNA:   3'- ggCCGgGUGGg-CGUCGGCG--UUGgACa -5'
23288 3' -62.6 NC_005259.1 + 48484 0.67 0.366397
Target:  5'- gUCGGCCUguuccucgACgCGCuugagGGCCGCGACUUGc -3'
miRNA:   3'- -GGCCGGG--------UGgGCG-----UCGGCGUUGGACa -5'
23288 3' -62.6 NC_005259.1 + 36973 0.67 0.366397
Target:  5'- cUCGGCCCGCaCCGCcgaacGUCGC-ACCg-- -3'
miRNA:   3'- -GGCCGGGUG-GGCGu----CGGCGuUGGaca -5'
23288 3' -62.6 NC_005259.1 + 40694 0.67 0.363159
Target:  5'- aCCGGCCCgaugaucgggguGCCCGCcaccacgguccaCCGCAGCCccUGg -3'
miRNA:   3'- -GGCCGGG------------UGGGCGuc----------GGCGUUGG--ACa -5'
23288 3' -62.6 NC_005259.1 + 33672 0.67 0.35834
Target:  5'- cCCGGCCCACCCu--GU-GCGACCa-- -3'
miRNA:   3'- -GGCCGGGUGGGcguCGgCGUUGGaca -5'
23288 3' -62.6 NC_005259.1 + 5732 0.67 0.350408
Target:  5'- gCGGCCauuCUCGCGGCCaagcggcgaGCuGCCUGa -3'
miRNA:   3'- gGCCGGgu-GGGCGUCGG---------CGuUGGACa -5'
23288 3' -62.6 NC_005259.1 + 8861 0.67 0.342602
Target:  5'- gCGuGCCCG-CCGCcuGCCGCAcccacgccGCCUGa -3'
miRNA:   3'- gGC-CGGGUgGGCGu-CGGCGU--------UGGACa -5'
23288 3' -62.6 NC_005259.1 + 46931 0.67 0.334922
Target:  5'- gCCGaGCUUGCCCGCcgcGCCGcCGACCg-- -3'
miRNA:   3'- -GGC-CGGGUGGGCGu--CGGC-GUUGGaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.