miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2329 5' -58.8 NC_001416.1 + 2562 1.1 0.000258
Target:  5'- aAUACUGAUGCGCAGCGCCGCCAGCGCa -3'
miRNA:   3'- -UAUGACUACGCGUCGCGGCGGUCGCG- -5'
2329 5' -58.8 NC_001416.1 + 4921 0.67 0.411238
Target:  5'- uUGCU--UGC-CAGUGCCGCCucccGGCGUc -3'
miRNA:   3'- uAUGAcuACGcGUCGCGGCGG----UCGCG- -5'
2329 5' -58.8 NC_001416.1 + 5392 0.72 0.185435
Target:  5'- uUACUGAcgugGUGcCAGCGacggagggcgagaaCGCCAGCGCg -3'
miRNA:   3'- uAUGACUa---CGC-GUCGCg-------------GCGGUCGCG- -5'
2329 5' -58.8 NC_001416.1 + 7808 0.67 0.392775
Target:  5'- -gACUGAUgagGUGCGGCaGCUG-CGGCGUg -3'
miRNA:   3'- uaUGACUA---CGCGUCG-CGGCgGUCGCG- -5'
2329 5' -58.8 NC_001416.1 + 8219 0.69 0.286543
Target:  5'- -aGCUGGguaaUGCGCGgguuguccuuucGCGCCGCaGGCGUc -3'
miRNA:   3'- uaUGACU----ACGCGU------------CGCGGCGgUCGCG- -5'
2329 5' -58.8 NC_001416.1 + 8572 0.67 0.37486
Target:  5'- --gUUGAUGCuGCAGCGCauaGcCCAGCu- -3'
miRNA:   3'- uauGACUACG-CGUCGCGg--C-GGUCGcg -5'
2329 5' -58.8 NC_001416.1 + 9214 0.67 0.37486
Target:  5'- -aGCaGggGCaGCAgGCGCUGCUGGCGUg -3'
miRNA:   3'- uaUGaCuaCG-CGU-CGCGGCGGUCGCG- -5'
2329 5' -58.8 NC_001416.1 + 10377 0.66 0.448739
Target:  5'- uGUGCUGAUGCagaaagcgGCAGgGCuUGCCGGaggugucCGCu -3'
miRNA:   3'- -UAUGACUACG--------CGUCgCG-GCGGUC-------GCG- -5'
2329 5' -58.8 NC_001416.1 + 12059 0.7 0.233203
Target:  5'- gGUACUGGaggaggcgGCGCAaCGUCGCCAGCu- -3'
miRNA:   3'- -UAUGACUa-------CGCGUcGCGGCGGUCGcg -5'
2329 5' -58.8 NC_001416.1 + 12284 0.67 0.401939
Target:  5'- uUGCUGcUGUGCGaauuuaucCGCCugcugcGCCAGCGCg -3'
miRNA:   3'- uAUGACuACGCGUc-------GCGG------CGGUCGCG- -5'
2329 5' -58.8 NC_001416.1 + 12730 0.68 0.332548
Target:  5'- -cGCgGAUGCGCcgccaccaacAGCcCCGCCaauGGCGCu -3'
miRNA:   3'- uaUGaCUACGCG----------UCGcGGCGG---UCGCG- -5'
2329 5' -58.8 NC_001416.1 + 12847 0.79 0.057451
Target:  5'- -gGCUGAUGCGCGGCuauGCCaCCGGCGg -3'
miRNA:   3'- uaUGACUACGCGUCG---CGGcGGUCGCg -5'
2329 5' -58.8 NC_001416.1 + 13438 0.68 0.348204
Target:  5'- -cACUGAaugaaugcacccgUGCGgAGCaGUCgGCCAGCGUg -3'
miRNA:   3'- uaUGACU-------------ACGCgUCG-CGG-CGGUCGCG- -5'
2329 5' -58.8 NC_001416.1 + 14764 0.66 0.420669
Target:  5'- ---aUGGUGCaGCAGCucGCCGUCGcCGCa -3'
miRNA:   3'- uaugACUACG-CGUCG--CGGCGGUcGCG- -5'
2329 5' -58.8 NC_001416.1 + 16114 0.68 0.340723
Target:  5'- -aGCUGGUcUGUGGUGCUGuCCGGCGUc -3'
miRNA:   3'- uaUGACUAcGCGUCGCGGC-GGUCGCG- -5'
2329 5' -58.8 NC_001416.1 + 16468 0.66 0.459655
Target:  5'- -gACUGGU-CGCAGUacugGCCGaugacauaCAGCGCc -3'
miRNA:   3'- uaUGACUAcGCGUCG----CGGCg-------GUCGCG- -5'
2329 5' -58.8 NC_001416.1 + 16509 0.72 0.178528
Target:  5'- -aGgUGAUGCGCGGCuccguGCCGCCAaaGCc -3'
miRNA:   3'- uaUgACUACGCGUCG-----CGGCGGUcgCG- -5'
2329 5' -58.8 NC_001416.1 + 17241 0.7 0.258753
Target:  5'- -cGCUG--GCGCAGCGUCGgCAGCu- -3'
miRNA:   3'- uaUGACuaCGCGUCGCGGCgGUCGcg -5'
2329 5' -58.8 NC_001416.1 + 20064 0.79 0.059149
Target:  5'- -gACUGAUGCaacugacucaGCAcGCGCCGCCAGCa- -3'
miRNA:   3'- uaUGACUACG----------CGU-CGCGGCGGUCGcg -5'
2329 5' -58.8 NC_001416.1 + 20212 0.7 0.258753
Target:  5'- uUGCUGAUGcCGCuucuGCGCCGgaGGaCGCu -3'
miRNA:   3'- uAUGACUAC-GCGu---CGCGGCggUC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.