Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23297 | 5' | -51.6 | NC_005259.1 | + | 49612 | 0.69 | 0.798558 |
|
Target: 5'- uCGGGcagcucaucaUCGUCAUCGGCGGCAgCCg -3' miRNA: 3'- -GCCCauuca-----AGUAGUGGUCGUCGU-GG- -5' |
|||||||
| 23297 | 5' | -51.6 | NC_005259.1 | + | 51344 | 0.67 | 0.890089 |
|
Target: 5'- -cGGUGAGcUCGgauaugC-CCGGUGGCACCg -3' miRNA: 3'- gcCCAUUCaAGUa-----GuGGUCGUCGUGG- -5' |
|||||||
| 23297 | 5' | -51.6 | NC_005259.1 | + | 53506 | 0.7 | 0.764401 |
|
Target: 5'- -cGGUGAacaacGUgcUCGUgGCCAGCGGCACg -3' miRNA: 3'- gcCCAUU-----CA--AGUAgUGGUCGUCGUGg -5' |
|||||||
| 23297 | 5' | -51.6 | NC_005259.1 | + | 57271 | 0.68 | 0.850145 |
|
Target: 5'- uGGGcGAGggauUgACCGGUGGCACCu -3' miRNA: 3'- gCCCaUUCaaguAgUGGUCGUCGUGG- -5' |
|||||||
| 23297 | 5' | -51.6 | NC_005259.1 | + | 58694 | 0.67 | 0.874874 |
|
Target: 5'- gGGGUcGGcUCGUCGCCGccGCcGuCACCa -3' miRNA: 3'- gCCCAuUCaAGUAGUGGU--CGuC-GUGG- -5' |
|||||||
| 23297 | 5' | -51.6 | NC_005259.1 | + | 60597 | 0.7 | 0.732915 |
|
Target: 5'- uCGGGUGc---CGUCAUCgAGCAGCACa -3' miRNA: 3'- -GCCCAUucaaGUAGUGG-UCGUCGUGg -5' |
|||||||
| 23297 | 5' | -51.6 | NC_005259.1 | + | 62130 | 0.66 | 0.929181 |
|
Target: 5'- cCGaGGUGA--UCGUCucgACCAccucaggccGCAGCACCu -3' miRNA: 3'- -GC-CCAUUcaAGUAG---UGGU---------CGUCGUGG- -5' |
|||||||
| 23297 | 5' | -51.6 | NC_005259.1 | + | 62363 | 0.71 | 0.700498 |
|
Target: 5'- cCGGGUAGGaUCAgcUCAUCgAGUAGCAgauCCa -3' miRNA: 3'- -GCCCAUUCaAGU--AGUGG-UCGUCGU---GG- -5' |
|||||||
| 23297 | 5' | -51.6 | NC_005259.1 | + | 65111 | 0.66 | 0.91089 |
|
Target: 5'- -cGGUcAGUgCGUCACCgucGGC-GCACCg -3' miRNA: 3'- gcCCAuUCAaGUAGUGG---UCGuCGUGG- -5' |
|||||||
| 23297 | 5' | -51.6 | NC_005259.1 | + | 66940 | 0.67 | 0.881851 |
|
Target: 5'- gGGGUGAGcgggaCACCGGCGagcuguuucuugcGCGCCu -3' miRNA: 3'- gCCCAUUCaaguaGUGGUCGU-------------CGUGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home