Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23298 | 3' | -63.4 | NC_005259.1 | + | 19247 | 1.09 | 0.000224 |
Target: 5'- uGAUCGAUGGCCGCCUGCCGGGCCGCCc -3' miRNA: 3'- -CUAGCUACCGGCGGACGGCCCGGCGG- -5' |
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23298 | 3' | -63.4 | NC_005259.1 | + | 25907 | 0.78 | 0.053645 |
Target: 5'- ---gGAUGGCCGCCUgaGCCGccGCCGCCg -3' miRNA: 3'- cuagCUACCGGCGGA--CGGCc-CGGCGG- -5' |
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23298 | 3' | -63.4 | NC_005259.1 | + | 23350 | 0.78 | 0.056639 |
Target: 5'- -cUCGA-GGCUGCCUG-CGaGGCCGCCg -3' miRNA: 3'- cuAGCUaCCGGCGGACgGC-CCGGCGG- -5' |
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23298 | 3' | -63.4 | NC_005259.1 | + | 45619 | 0.77 | 0.06845 |
Target: 5'- -cUCGAUGcCCGCCggGCCGGGCagcgCGCCg -3' miRNA: 3'- cuAGCUACcGGCGGa-CGGCCCG----GCGG- -5' |
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23298 | 3' | -63.4 | NC_005259.1 | + | 37644 | 0.76 | 0.07224 |
Target: 5'- --cCGAUGaccgcaccGCCGCCgccGCCGGuGCCGCCa -3' miRNA: 3'- cuaGCUAC--------CGGCGGa--CGGCC-CGGCGG- -5' |
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23298 | 3' | -63.4 | NC_005259.1 | + | 17752 | 0.74 | 0.10496 |
Target: 5'- cGAUCcGUgaGGCCGCCgcgcGCCGGGCCGa- -3' miRNA: 3'- -CUAGcUA--CCGGCGGa---CGGCCCGGCgg -5' |
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23298 | 3' | -63.4 | NC_005259.1 | + | 14307 | 0.74 | 0.113299 |
Target: 5'- cGGUgCGuAUGGCCGCCcucgacGCCgccgcccgcgugcGGGCCGCCg -3' miRNA: 3'- -CUA-GC-UACCGGCGGa-----CGG-------------CCCGGCGG- -5' |
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23298 | 3' | -63.4 | NC_005259.1 | + | 49082 | 0.73 | 0.119721 |
Target: 5'- gGAUCGcucgagggugucAUGGCCGCCcGCCGGGaucucaagaCGCUg -3' miRNA: 3'- -CUAGC------------UACCGGCGGaCGGCCCg--------GCGG- -5' |
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23298 | 3' | -63.4 | NC_005259.1 | + | 53259 | 0.73 | 0.12615 |
Target: 5'- cGUCGcc-GCCGCUgucGCCGGuGCCGCCa -3' miRNA: 3'- cUAGCuacCGGCGGa--CGGCC-CGGCGG- -5' |
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23298 | 3' | -63.4 | NC_005259.1 | + | 58578 | 0.73 | 0.12615 |
Target: 5'- gGAUCGc-GGCgCGgCUGCCGGGCCGg- -3' miRNA: 3'- -CUAGCuaCCG-GCgGACGGCCCGGCgg -5' |
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23298 | 3' | -63.4 | NC_005259.1 | + | 30154 | 0.73 | 0.136395 |
Target: 5'- -cUCGAccgGGCCGCCUaCa-GGCCGCCa -3' miRNA: 3'- cuAGCUa--CCGGCGGAcGgcCCGGCGG- -5' |
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23298 | 3' | -63.4 | NC_005259.1 | + | 57685 | 0.72 | 0.139977 |
Target: 5'- aAUCGAccgUGGCCaGgUUGCCGGGCUuGCCc -3' miRNA: 3'- cUAGCU---ACCGG-CgGACGGCCCGG-CGG- -5' |
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23298 | 3' | -63.4 | NC_005259.1 | + | 35624 | 0.72 | 0.139977 |
Target: 5'- cGUCGAguaguucgGGCCGCC-GCCGcuGCCGCUg -3' miRNA: 3'- cUAGCUa-------CCGGCGGaCGGCc-CGGCGG- -5' |
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23298 | 3' | -63.4 | NC_005259.1 | + | 42208 | 0.72 | 0.143645 |
Target: 5'- --gCGAUGGauGCCcGCCGcGCCGCCg -3' miRNA: 3'- cuaGCUACCggCGGaCGGCcCGGCGG- -5' |
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23298 | 3' | -63.4 | NC_005259.1 | + | 45317 | 0.72 | 0.153595 |
Target: 5'- --cCGA-GGCCGCCgccgaacugcgugGCCugcgccgccuGGGCCGCCg -3' miRNA: 3'- cuaGCUaCCGGCGGa------------CGG----------CCCGGCGG- -5' |
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23298 | 3' | -63.4 | NC_005259.1 | + | 60265 | 0.72 | 0.15518 |
Target: 5'- ---aGGcUGGCCaccaGCgCUGCCGGGCgGCCa -3' miRNA: 3'- cuagCU-ACCGG----CG-GACGGCCCGgCGG- -5' |
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23298 | 3' | -63.4 | NC_005259.1 | + | 45504 | 0.71 | 0.163331 |
Target: 5'- uGGUCGcuGUGGCCaCCgcGCCGguguuGGCCGCCg -3' miRNA: 3'- -CUAGC--UACCGGcGGa-CGGC-----CCGGCGG- -5' |
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23298 | 3' | -63.4 | NC_005259.1 | + | 40457 | 0.71 | 0.167549 |
Target: 5'- --cCGGugUGGuuGacguaCUGCCGGGCCGCg -3' miRNA: 3'- cuaGCU--ACCggCg----GACGGCCCGGCGg -5' |
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23298 | 3' | -63.4 | NC_005259.1 | + | 29927 | 0.71 | 0.180793 |
Target: 5'- cAUCGAcgcgUGGCCGCCacgcgGCCcGGUCGCg -3' miRNA: 3'- cUAGCU----ACCGGCGGa----CGGcCCGGCGg -5' |
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23298 | 3' | -63.4 | NC_005259.1 | + | 45394 | 0.71 | 0.180793 |
Target: 5'- -cUCGG-GGUCGCC-GCCGagcgcgcugauGGCCGCCg -3' miRNA: 3'- cuAGCUaCCGGCGGaCGGC-----------CCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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