miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23298 3' -63.4 NC_005259.1 + 58810 0.66 0.39355
Target:  5'- -cUCGGcgGGCuCGCgCUGCuCGGcacccucGCCGCCc -3'
miRNA:   3'- cuAGCUa-CCG-GCG-GACG-GCC-------CGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 35624 0.72 0.139977
Target:  5'- cGUCGAguaguucgGGCCGCC-GCCGcuGCCGCUg -3'
miRNA:   3'- cUAGCUa-------CCGGCGGaCGGCc-CGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 42208 0.72 0.143645
Target:  5'- --gCGAUGGauGCCcGCCGcGCCGCCg -3'
miRNA:   3'- cuaGCUACCggCGGaCGGCcCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 45317 0.72 0.153595
Target:  5'- --cCGA-GGCCGCCgccgaacugcgugGCCugcgccgccuGGGCCGCCg -3'
miRNA:   3'- cuaGCUaCCGGCGGa------------CGG----------CCCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 60265 0.72 0.15518
Target:  5'- ---aGGcUGGCCaccaGCgCUGCCGGGCgGCCa -3'
miRNA:   3'- cuagCU-ACCGG----CG-GACGGCCCGgCGG- -5'
23298 3' -63.4 NC_005259.1 + 45504 0.71 0.163331
Target:  5'- uGGUCGcuGUGGCCaCCgcGCCGguguuGGCCGCCg -3'
miRNA:   3'- -CUAGC--UACCGGcGGa-CGGC-----CCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 40457 0.71 0.167549
Target:  5'- --cCGGugUGGuuGacguaCUGCCGGGCCGCg -3'
miRNA:   3'- cuaGCU--ACCggCg----GACGGCCCGGCGg -5'
23298 3' -63.4 NC_005259.1 + 29927 0.71 0.180793
Target:  5'- cAUCGAcgcgUGGCCGCCacgcgGCCcGGUCGCg -3'
miRNA:   3'- cUAGCU----ACCGGCGGa----CGGcCCGGCGg -5'
23298 3' -63.4 NC_005259.1 + 45394 0.71 0.180793
Target:  5'- -cUCGG-GGUCGCC-GCCGagcgcgcugauGGCCGCCg -3'
miRNA:   3'- cuAGCUaCCGGCGGaCGGC-----------CCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 57685 0.72 0.139977
Target:  5'- aAUCGAccgUGGCCaGgUUGCCGGGCUuGCCc -3'
miRNA:   3'- cUAGCU---ACCGG-CgGACGGCCCGG-CGG- -5'
23298 3' -63.4 NC_005259.1 + 30154 0.73 0.136395
Target:  5'- -cUCGAccgGGCCGCCUaCa-GGCCGCCa -3'
miRNA:   3'- cuAGCUa--CCGGCGGAcGgcCCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 58578 0.73 0.12615
Target:  5'- gGAUCGc-GGCgCGgCUGCCGGGCCGg- -3'
miRNA:   3'- -CUAGCuaCCG-GCgGACGGCCCGGCgg -5'
23298 3' -63.4 NC_005259.1 + 25907 0.78 0.053645
Target:  5'- ---gGAUGGCCGCCUgaGCCGccGCCGCCg -3'
miRNA:   3'- cuagCUACCGGCGGA--CGGCc-CGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 23350 0.78 0.056639
Target:  5'- -cUCGA-GGCUGCCUG-CGaGGCCGCCg -3'
miRNA:   3'- cuAGCUaCCGGCGGACgGC-CCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 45619 0.77 0.06845
Target:  5'- -cUCGAUGcCCGCCggGCCGGGCagcgCGCCg -3'
miRNA:   3'- cuAGCUACcGGCGGa-CGGCCCG----GCGG- -5'
23298 3' -63.4 NC_005259.1 + 37644 0.76 0.07224
Target:  5'- --cCGAUGaccgcaccGCCGCCgccGCCGGuGCCGCCa -3'
miRNA:   3'- cuaGCUAC--------CGGCGGa--CGGCC-CGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 17752 0.74 0.10496
Target:  5'- cGAUCcGUgaGGCCGCCgcgcGCCGGGCCGa- -3'
miRNA:   3'- -CUAGcUA--CCGGCGGa---CGGCCCGGCgg -5'
23298 3' -63.4 NC_005259.1 + 14307 0.74 0.113299
Target:  5'- cGGUgCGuAUGGCCGCCcucgacGCCgccgcccgcgugcGGGCCGCCg -3'
miRNA:   3'- -CUA-GC-UACCGGCGGa-----CGG-------------CCCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 49082 0.73 0.119721
Target:  5'- gGAUCGcucgagggugucAUGGCCGCCcGCCGGGaucucaagaCGCUg -3'
miRNA:   3'- -CUAGC------------UACCGGCGGaCGGCCCg--------GCGG- -5'
23298 3' -63.4 NC_005259.1 + 53259 0.73 0.12615
Target:  5'- cGUCGcc-GCCGCUgucGCCGGuGCCGCCa -3'
miRNA:   3'- cUAGCuacCGGCGGa--CGGCC-CGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.