miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23298 3' -63.4 NC_005259.1 + 68841 0.68 0.260973
Target:  5'- aGUCGGUgaggugGGCCaucaugucgacuuGCCcgcGCCGGGCgCGCCg -3'
miRNA:   3'- cUAGCUA------CCGG-------------CGGa--CGGCCCG-GCGG- -5'
23298 3' -63.4 NC_005259.1 + 44467 0.69 0.255401
Target:  5'- ---gGAUGccGCCGCCcugGCCGGGCCaGUUg -3'
miRNA:   3'- cuagCUAC--CGGCGGa--CGGCCCGG-CGG- -5'
23298 3' -63.4 NC_005259.1 + 43027 0.69 0.255401
Target:  5'- --gCGAU-GCCGCCgaGCa-GGCCGCCg -3'
miRNA:   3'- cuaGCUAcCGGCGGa-CGgcCCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 41379 0.69 0.253565
Target:  5'- cGGUCGAgcuUGGCCgguacccauggcgcGCCgcucggggUGCCcacgaugugcacGGGCCGCCa -3'
miRNA:   3'- -CUAGCU---ACCGG--------------CGG--------ACGG------------CCCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 60125 0.69 0.249324
Target:  5'- uAUCGgcGGCCucguCCUGCgCGgccuuGGCCGCCg -3'
miRNA:   3'- cUAGCuaCCGGc---GGACG-GC-----CCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 49536 0.69 0.249324
Target:  5'- -cUCGAacgUGGCCaCCucagUGCCGGGCUGUUc -3'
miRNA:   3'- cuAGCU---ACCGGcGG----ACGGCCCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 37245 0.69 0.248723
Target:  5'- --cCGGauUGGCUGCC-GCCGuugccaggcuugaGGCCGCCc -3'
miRNA:   3'- cuaGCU--ACCGGCGGaCGGC-------------CCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 37512 0.69 0.241018
Target:  5'- --aCGAU-GCUGCCcgacgagaagaucGUCGGGCCGCCg -3'
miRNA:   3'- cuaGCUAcCGGCGGa------------CGGCCCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 67160 0.69 0.23181
Target:  5'- uGUCGAUGGUgGCg-GCCauGCCGCCg -3'
miRNA:   3'- cUAGCUACCGgCGgaCGGccCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 56217 0.69 0.23181
Target:  5'- gGAUCGGUGuaUGCCaGUCGucGCCGCCg -3'
miRNA:   3'- -CUAGCUACcgGCGGaCGGCc-CGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 26020 0.69 0.23181
Target:  5'- ---gGAUGGCCGCaaGCgGGuuggccagcagcGCCGCCg -3'
miRNA:   3'- cuagCUACCGGCGgaCGgCC------------CGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 47960 0.69 0.226206
Target:  5'- --cCGAUGGCCGCCgcGCCGc-CCGCg -3'
miRNA:   3'- cuaGCUACCGGCGGa-CGGCccGGCGg -5'
23298 3' -63.4 NC_005259.1 + 1353 0.69 0.226206
Target:  5'- --aCGGUgccuacugGGCCGCUcGCCGcGCCGCCc -3'
miRNA:   3'- cuaGCUA--------CCGGCGGaCGGCcCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 54708 0.69 0.225652
Target:  5'- ---gGGUGGCCucaGCCUgguacaggacauaGCCGaGGCUGCCg -3'
miRNA:   3'- cuagCUACCGG---CGGA-------------CGGC-CCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 55016 0.7 0.220718
Target:  5'- -cUUGgcGGUCGUCUcgGCaCGGGCUGCCg -3'
miRNA:   3'- cuAGCuaCCGGCGGA--CG-GCCCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 19855 0.7 0.215343
Target:  5'- -cUCGGugUGGCgcucgCGCCcGCCGGGaUCGCCg -3'
miRNA:   3'- cuAGCU--ACCG-----GCGGaCGGCCC-GGCGG- -5'
23298 3' -63.4 NC_005259.1 + 20105 0.7 0.215343
Target:  5'- --gUGGUGaGCCGCCgucucaagGCCGcacuGGCUGCCg -3'
miRNA:   3'- cuaGCUAC-CGGCGGa-------CGGC----CCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 8661 0.7 0.210081
Target:  5'- uGGUCG--GGCUGCCacgcggGCaacgGGGCCGCCu -3'
miRNA:   3'- -CUAGCuaCCGGCGGa-----CGg---CCCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 42949 0.7 0.208524
Target:  5'- uGggCGA-GGCCGCCguugucgaacgggaUGCCGGggaucaucguuGCCGCCc -3'
miRNA:   3'- -CuaGCUaCCGGCGG--------------ACGGCC-----------CGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 43727 0.7 0.20493
Target:  5'- aGUCGAUGGCgGCCaUGCCGccgaGCCGg- -3'
miRNA:   3'- cUAGCUACCGgCGG-ACGGCc---CGGCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.