miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23298 3' -63.4 NC_005259.1 + 65155 0.67 0.330385
Target:  5'- aGUCGAaacgGGCCaugGCCcGCCGGGUcaaggCGCUg -3'
miRNA:   3'- cUAGCUa---CCGG---CGGaCGGCCCG-----GCGG- -5'
23298 3' -63.4 NC_005259.1 + 38664 0.67 0.330385
Target:  5'- aAUCGAccaccucgcuguUGGCCGCCggGUCGaGGuuGgCCa -3'
miRNA:   3'- cUAGCU------------ACCGGCGGa-CGGC-CCggC-GG- -5'
23298 3' -63.4 NC_005259.1 + 34439 0.67 0.322942
Target:  5'- -cUCGAUGaGCUGCC-GaCCGGGCaGCg -3'
miRNA:   3'- cuAGCUAC-CGGCGGaC-GGCCCGgCGg -5'
23298 3' -63.4 NC_005259.1 + 37761 0.67 0.322942
Target:  5'- aGcgCGGUGGCC-CCUG-CGGGCacgaGCg -3'
miRNA:   3'- -CuaGCUACCGGcGGACgGCCCGg---CGg -5'
23298 3' -63.4 NC_005259.1 + 43914 0.67 0.320734
Target:  5'- uGAUCGAUGGgcagcgacgacaCCGCgcuacugacagcguCggcgauggGCgGGGCCGCCg -3'
miRNA:   3'- -CUAGCUACC------------GGCG--------------Ga-------CGgCCCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 6921 0.67 0.315625
Target:  5'- cAUCGAgaaccGCCGCCgccuugagGCCGagcucGCCGCCg -3'
miRNA:   3'- cUAGCUac---CGGCGGa-------CGGCc----CGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 39504 0.67 0.315625
Target:  5'- -cUUGAUGGCCGC--GCCGcuGGCCaCCa -3'
miRNA:   3'- cuAGCUACCGGCGgaCGGC--CCGGcGG- -5'
23298 3' -63.4 NC_005259.1 + 8305 0.67 0.315625
Target:  5'- --aCGGaaacGCCGCCuUGUCGGaGCUGCCg -3'
miRNA:   3'- cuaGCUac--CGGCGG-ACGGCC-CGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 26055 0.67 0.314901
Target:  5'- gGGUUGGccauGCCGCC-GCCGagcagucccccgaGGCCGCCg -3'
miRNA:   3'- -CUAGCUac--CGGCGGaCGGC-------------CCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 43249 0.67 0.308435
Target:  5'- --aCGAU-GCCGCCcgcGCCGGG-UGCCu -3'
miRNA:   3'- cuaGCUAcCGGCGGa--CGGCCCgGCGG- -5'
23298 3' -63.4 NC_005259.1 + 27991 0.67 0.30137
Target:  5'- -uUgGGUGGUgcgggUGCCgggGCgGGGUCGCCg -3'
miRNA:   3'- cuAgCUACCG-----GCGGa--CGgCCCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 1858 0.67 0.30067
Target:  5'- --cCGAgaaaGCCGCC-GCCGcguuccguaagcaGGCCGCCg -3'
miRNA:   3'- cuaGCUac--CGGCGGaCGGC-------------CCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 56880 0.68 0.280926
Target:  5'- -cUCGAUGaGCCGaCC-GCCaaucgcagcGuGGCCGCCg -3'
miRNA:   3'- cuAGCUAC-CGGC-GGaCGG---------C-CCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 42763 0.68 0.27436
Target:  5'- -cUCGAUcugcucGGCgGUCU-CgGGGCCGCCa -3'
miRNA:   3'- cuAGCUA------CCGgCGGAcGgCCCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 8861 0.68 0.27436
Target:  5'- --gCGugcccGCCGCCUGCCGcacccacGCCGCCu -3'
miRNA:   3'- cuaGCuac--CGGCGGACGGCc------CGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 45545 0.68 0.267918
Target:  5'- --gCGAgcgGGuuGCUcGCCGGGCCaCCc -3'
miRNA:   3'- cuaGCUa--CCggCGGaCGGCCCGGcGG- -5'
23298 3' -63.4 NC_005259.1 + 15155 0.68 0.267918
Target:  5'- -cUCGGUGGCCGag-GCCGaGGCCa-- -3'
miRNA:   3'- cuAGCUACCGGCggaCGGC-CCGGcgg -5'
23298 3' -63.4 NC_005259.1 + 28619 0.68 0.261599
Target:  5'- --aUGAUGGCCaagGCCaaggccaccggUGCCGacaccgccgaGGCCGCCg -3'
miRNA:   3'- cuaGCUACCGG---CGG-----------ACGGC----------CCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 6102 0.68 0.261599
Target:  5'- --cCGAga-UCGCCgagGCCGaGGCCGCCg -3'
miRNA:   3'- cuaGCUaccGGCGGa--CGGC-CCGGCGG- -5'
23298 3' -63.4 NC_005259.1 + 68841 0.68 0.260973
Target:  5'- aGUCGGUgaggugGGCCaucaugucgacuuGCCcgcGCCGGGCgCGCCg -3'
miRNA:   3'- cUAGCUA------CCGG-------------CGGa--CGGCCCG-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.