miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23298 5' -53.1 NC_005259.1 + 44944 0.67 0.820245
Target:  5'- cAUGgcACCAgCGGGCAGugcggucaucGGGAUGCCGAg -3'
miRNA:   3'- -UAC--UGGUgGUUCGUCu---------UCUUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 30686 0.67 0.820245
Target:  5'- cUGGCCACCugAGGCAGcacGAGCguguuguugccGCCGAc -3'
miRNA:   3'- uACUGGUGG--UUCGUCuu-CUUG-----------CGGCU- -5'
23298 5' -53.1 NC_005259.1 + 64928 0.67 0.820245
Target:  5'- gAUGACgaguGCC-AGCGcGAGGGugGCCGGg -3'
miRNA:   3'- -UACUGg---UGGuUCGU-CUUCUugCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 10201 0.67 0.820245
Target:  5'- gAUGACgACCGGGCAGcucgaccaccacGAGAugGCg-- -3'
miRNA:   3'- -UACUGgUGGUUCGUC------------UUCUugCGgcu -5'
23298 5' -53.1 NC_005259.1 + 38667 0.67 0.801159
Target:  5'- -cGACCACCucGCuGuuGGcCGCCGGg -3'
miRNA:   3'- uaCUGGUGGuuCGuCuuCUuGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 25278 0.67 0.801159
Target:  5'- gAUGGCCACCGuGCAcGAcaAGGACGgcaaagaauCCGAg -3'
miRNA:   3'- -UACUGGUGGUuCGU-CU--UCUUGC---------GGCU- -5'
23298 5' -53.1 NC_005259.1 + 18766 0.67 0.768123
Target:  5'- cAUGGCCuGCCAcaucgcggugggcaAGCGGuggcAGGGACGCCGc -3'
miRNA:   3'- -UACUGG-UGGU--------------UCGUC----UUCUUGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 24881 0.67 0.781347
Target:  5'- cUGACCGCUaucGAGuCAGccGAGGACGgCGAg -3'
miRNA:   3'- uACUGGUGG---UUC-GUC--UUCUUGCgGCU- -5'
23298 5' -53.1 NC_005259.1 + 23678 0.67 0.781347
Target:  5'- -cGACC-CCGAGCAGgcGcACGCaGAc -3'
miRNA:   3'- uaCUGGuGGUUCGUCuuCuUGCGgCU- -5'
23298 5' -53.1 NC_005259.1 + 55865 0.67 0.785363
Target:  5'- gGUGAacUCGCCGAGCGccucgccccgaccucGggGGucGCGCCGGg -3'
miRNA:   3'- -UACU--GGUGGUUCGU---------------CuuCU--UGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 6120 0.67 0.790346
Target:  5'- -aGGCCGCCGcuacgcgGGCacugcaacgcguAGAAGAacucaggaaGCGCCGAa -3'
miRNA:   3'- uaCUGGUGGU-------UCG------------UCUUCU---------UGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 5419 0.67 0.791338
Target:  5'- cUGGCCGCCAcGUcGAGGucuGCGCCc- -3'
miRNA:   3'- uACUGGUGGUuCGuCUUCu--UGCGGcu -5'
23298 5' -53.1 NC_005259.1 + 42955 0.67 0.791338
Target:  5'- -aGGCCGCCGuuGUcGAacGGGAUGCCGGg -3'
miRNA:   3'- uaCUGGUGGUu-CGuCU--UCUUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 26021 0.67 0.791338
Target:  5'- gAUGGCCG-CAAGCGGGuuggccAGcAGCGCCGc -3'
miRNA:   3'- -UACUGGUgGUUCGUCU------UC-UUGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 56075 0.66 0.83852
Target:  5'- -aGACCGUCGAGCAGAucGGugcuCGUCGGg -3'
miRNA:   3'- uaCUGGUGGUUCGUCU--UCuu--GCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 38720 0.66 0.837627
Target:  5'- uUGACCACCGcugccgccguaccGGCGGuGGccCGCCGc -3'
miRNA:   3'- uACUGGUGGU-------------UCGUCuUCuuGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 55460 0.66 0.829489
Target:  5'- -gGGCCACCcguGCAGggGuguACGCguaGAu -3'
miRNA:   3'- uaCUGGUGGuu-CGUCuuCu--UGCGg--CU- -5'
23298 5' -53.1 NC_005259.1 + 37275 0.66 0.829489
Target:  5'- -aGGCCGCCcGGCAGGacuugcauggcGGugccCGCCGGg -3'
miRNA:   3'- uaCUGGUGGuUCGUCU-----------UCuu--GCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 35637 0.66 0.829489
Target:  5'- -gGGCCGCCGccgcugccgcuGGC-GAGGGugGCCa- -3'
miRNA:   3'- uaCUGGUGGU-----------UCGuCUUCUugCGGcu -5'
23298 5' -53.1 NC_005259.1 + 58589 0.66 0.864243
Target:  5'- -cGGCUGCCGGGcCGGAucuuuucGAGCGCCu- -3'
miRNA:   3'- uaCUGGUGGUUC-GUCUu------CUUGCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.