miRNA display CGI


Results 41 - 60 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23298 5' -53.1 NC_005259.1 + 38720 0.66 0.837627
Target:  5'- uUGACCACCGcugccgccguaccGGCGGuGGccCGCCGc -3'
miRNA:   3'- uACUGGUGGU-------------UCGUCuUCuuGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 40659 0.7 0.61902
Target:  5'- cAUGcUCGCCGAGCAGcgcGAGCGCCu- -3'
miRNA:   3'- -UACuGGUGGUUCGUCuu-CUUGCGGcu -5'
23298 5' -53.1 NC_005259.1 + 42955 0.67 0.791338
Target:  5'- -aGGCCGCCGuuGUcGAacGGGAUGCCGGg -3'
miRNA:   3'- uaCUGGUGGUu-CGuCU--UCUUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 43029 0.73 0.468151
Target:  5'- gAUG-CCGCCGAGCAGGc---CGCCGAg -3'
miRNA:   3'- -UACuGGUGGUUCGUCUucuuGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 43221 0.68 0.729246
Target:  5'- cUGAcCCGCCGAGCuGAuGAGCgaGCUGAc -3'
miRNA:   3'- uACU-GGUGGUUCGuCUuCUUG--CGGCU- -5'
23298 5' -53.1 NC_005259.1 + 43966 0.69 0.707625
Target:  5'- -gGGCCGCCGccugaccgagGGCGGugccgauGGACGCUGAa -3'
miRNA:   3'- uaCUGGUGGU----------UCGUCuu-----CUUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 44556 0.71 0.552729
Target:  5'- -aGACCGgCAGGCAGc---GCGCCGAc -3'
miRNA:   3'- uaCUGGUgGUUCGUCuucuUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 44944 0.67 0.820245
Target:  5'- cAUGgcACCAgCGGGCAGugcggucaucGGGAUGCCGAg -3'
miRNA:   3'- -UAC--UGGUgGUUCGUCu---------UCUUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 45402 0.68 0.729246
Target:  5'- --cGCCGCCGAGCGcGcuGAugGCCGc -3'
miRNA:   3'- uacUGGUGGUUCGU-CuuCUugCGGCu -5'
23298 5' -53.1 NC_005259.1 + 45530 0.68 0.739913
Target:  5'- uUGGCCGCCGuggcugcgAGCGGGuugcuCGCCGGg -3'
miRNA:   3'- uACUGGUGGU--------UCGUCUucuu-GCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 45622 0.7 0.64131
Target:  5'- gAUGcCCGCCGGGcCGGGcAGcGCGCCGGu -3'
miRNA:   3'- -UACuGGUGGUUC-GUCU-UCuUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 46899 0.69 0.674654
Target:  5'- gAUGAgcgcCCGCCGAGCAGuccgcguGCGCCGc -3'
miRNA:   3'- -UACU----GGUGGUUCGUCuucu---UGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 47264 0.68 0.760901
Target:  5'- gGUGACgcguuccagcgCACCGAGCAGAccgccguCGCCGGa -3'
miRNA:   3'- -UACUG-----------GUGGUUCGUCUucuu---GCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 48052 0.66 0.864243
Target:  5'- gGUGGCCAC--GGCGGGu-AGCGCCGc -3'
miRNA:   3'- -UACUGGUGguUCGUCUucUUGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 51738 0.66 0.855906
Target:  5'- gAUGGCCACCGccacgcucucGGCAgcguugcgcucGgcGAGCGCCu- -3'
miRNA:   3'- -UACUGGUGGU----------UCGU-----------CuuCUUGCGGcu -5'
23298 5' -53.1 NC_005259.1 + 52403 0.69 0.696695
Target:  5'- -gGGCCAUCGAGguGu-GGGCGCuCGAc -3'
miRNA:   3'- uaCUGGUGGUUCguCuuCUUGCG-GCU- -5'
23298 5' -53.1 NC_005259.1 + 55460 0.66 0.829489
Target:  5'- -gGGCCACCcguGCAGggGuguACGCguaGAu -3'
miRNA:   3'- uaCUGGUGGuu-CGUCuuCu--UGCGg--CU- -5'
23298 5' -53.1 NC_005259.1 + 55539 0.66 0.83852
Target:  5'- --cGCCGCCucguuGGCGucGAGGAUGCCGAa -3'
miRNA:   3'- uacUGGUGGu----UCGUc-UUCUUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 55865 0.67 0.785363
Target:  5'- gGUGAacUCGCCGAGCGccucgccccgaccucGggGGucGCGCCGGg -3'
miRNA:   3'- -UACU--GGUGGUUCGU---------------CuuCU--UGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 56075 0.66 0.83852
Target:  5'- -aGACCGUCGAGCAGAucGGugcuCGUCGGg -3'
miRNA:   3'- uaCUGGUGGUUCGUCU--UCuu--GCGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.