Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23298 | 5' | -53.1 | NC_005259.1 | + | 23678 | 0.67 | 0.781347 |
Target: 5'- -cGACC-CCGAGCAGgcGcACGCaGAc -3' miRNA: 3'- uaCUGGuGGUUCGUCuuCuUGCGgCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 24835 | 0.66 | 0.825816 |
Target: 5'- -cGcACCgACCAAGCAGuccgugcgcuACGCCGAg -3' miRNA: 3'- uaC-UGG-UGGUUCGUCuucu------UGCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 24881 | 0.67 | 0.781347 |
Target: 5'- cUGACCGCUaucGAGuCAGccGAGGACGgCGAg -3' miRNA: 3'- uACUGGUGG---UUC-GUC--UUCUUGCgGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 25278 | 0.67 | 0.801159 |
Target: 5'- gAUGGCCACCGuGCAcGAcaAGGACGgcaaagaauCCGAg -3' miRNA: 3'- -UACUGGUGGUuCGU-CU--UCUUGC---------GGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 25346 | 0.72 | 0.53106 |
Target: 5'- cUGugC-CCGAGCc-GGGAACGCCGAa -3' miRNA: 3'- uACugGuGGUUCGucUUCUUGCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 26021 | 0.67 | 0.791338 |
Target: 5'- gAUGGCCG-CAAGCGGGuuggccAGcAGCGCCGc -3' miRNA: 3'- -UACUGGUgGUUCGUCU------UC-UUGCGGCu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 26063 | 0.71 | 0.574657 |
Target: 5'- cAUGccGCCGCCGAGCAGucccccGAGGccgcCGCCGAg -3' miRNA: 3'- -UAC--UGGUGGUUCGUC------UUCUu---GCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 26103 | 0.69 | 0.674654 |
Target: 5'- -aGACCcCCGAGCAGAccgccgccgccGGu-CGCCGGu -3' miRNA: 3'- uaCUGGuGGUUCGUCU-----------UCuuGCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 26435 | 0.72 | 0.488722 |
Target: 5'- -cGcACCGCCGAGCGGgcGGGCcgguggGCCGAu -3' miRNA: 3'- uaC-UGGUGGUUCGUCuuCUUG------CGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 26509 | 0.7 | 0.64131 |
Target: 5'- --cGCCGCCcGGCgAGAAGAGCGCgGu -3' miRNA: 3'- uacUGGUGGuUCG-UCUUCUUGCGgCu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 28224 | 0.69 | 0.707625 |
Target: 5'- cGUGccGCCACCGucGGCGGcGGGGugGUCGAu -3' miRNA: 3'- -UAC--UGGUGGU--UCGUC-UUCUugCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 28878 | 0.68 | 0.749418 |
Target: 5'- -gGGCCGgguacguguucgUCAAGCAGAuugucggcgacgaGGAACGCCGc -3' miRNA: 3'- uaCUGGU------------GGUUCGUCU-------------UCUUGCGGCu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 30547 | 0.78 | 0.249626 |
Target: 5'- cAUGGCCACCGAGCGGuuGuuGACGCCc- -3' miRNA: 3'- -UACUGGUGGUUCGUCuuC--UUGCGGcu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 30686 | 0.67 | 0.820245 |
Target: 5'- cUGGCCACCugAGGCAGcacGAGCguguuguugccGCCGAc -3' miRNA: 3'- uACUGGUGG--UUCGUCuu-CUUG-----------CGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 32554 | 0.67 | 0.810798 |
Target: 5'- uUGGCCGCCccggcGAGCGcGggGAuaGCGuuGGg -3' miRNA: 3'- uACUGGUGG-----UUCGU-CuuCU--UGCggCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 34534 | 0.67 | 0.810798 |
Target: 5'- cUGACCACCgAGGCAGccucAGcuUGCCGu -3' miRNA: 3'- uACUGGUGG-UUCGUCu---UCuuGCGGCu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 35637 | 0.66 | 0.829489 |
Target: 5'- -gGGCCGCCGccgcugccgcuGGC-GAGGGugGCCa- -3' miRNA: 3'- uaCUGGUGGU-----------UCGuCUUCUugCGGcu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 37275 | 0.66 | 0.829489 |
Target: 5'- -aGGCCGCCcGGCAGGacuugcauggcGGugccCGCCGGg -3' miRNA: 3'- uaCUGGUGGuUCGUCU-----------UCuu--GCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 37591 | 0.66 | 0.847329 |
Target: 5'- -cGAUCugCAAGCu---GAACGUCGGg -3' miRNA: 3'- uaCUGGugGUUCGucuuCUUGCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 38667 | 0.67 | 0.801159 |
Target: 5'- -cGACCACCucGCuGuuGGcCGCCGGg -3' miRNA: 3'- uaCUGGUGGuuCGuCuuCUuGCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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