Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23298 | 5' | -53.1 | NC_005259.1 | + | 18580 | 0.69 | 0.663566 |
Target: 5'- -cGACC-CCGAGCAGAccGACcCCGAu -3' miRNA: 3'- uaCUGGuGGUUCGUCUucUUGcGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 26103 | 0.69 | 0.674654 |
Target: 5'- -aGACCcCCGAGCAGAccgccgccgccGGu-CGCCGGu -3' miRNA: 3'- uaCUGGuGGUUCGUCU-----------UCuuGCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 46899 | 0.69 | 0.674654 |
Target: 5'- gAUGAgcgcCCGCCGAGCAGuccgcguGCGCCGc -3' miRNA: 3'- -UACU----GGUGGUUCGUCuucu---UGCGGCu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 52403 | 0.69 | 0.696695 |
Target: 5'- -gGGCCAUCGAGguGu-GGGCGCuCGAc -3' miRNA: 3'- uaCUGGUGGUUCguCuuCUUGCG-GCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 63559 | 0.69 | 0.696695 |
Target: 5'- -cGGCCACCGacgcgacgAGCGGGAuauACGCCGc -3' miRNA: 3'- uaCUGGUGGU--------UCGUCUUcu-UGCGGCu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 43966 | 0.69 | 0.707625 |
Target: 5'- -gGGCCGCCGccugaccgagGGCGGugccgauGGACGCUGAa -3' miRNA: 3'- uaCUGGUGGU----------UCGUCuu-----CUUGCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 28224 | 0.69 | 0.707625 |
Target: 5'- cGUGccGCCACCGucGGCGGcGGGGugGUCGAu -3' miRNA: 3'- -UAC--UGGUGGU--UCGUC-UUCUugCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 68405 | 0.68 | 0.718479 |
Target: 5'- -gGACCACCAAcGUAGAccuuGACGCCu- -3' miRNA: 3'- uaCUGGUGGUU-CGUCUuc--UUGCGGcu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 43221 | 0.68 | 0.729246 |
Target: 5'- cUGAcCCGCCGAGCuGAuGAGCgaGCUGAc -3' miRNA: 3'- uACU-GGUGGUUCGuCUuCUUG--CGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 45402 | 0.68 | 0.729246 |
Target: 5'- --cGCCGCCGAGCGcGcuGAugGCCGc -3' miRNA: 3'- uacUGGUGGUUCGU-CuuCUugCGGCu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 45530 | 0.68 | 0.739913 |
Target: 5'- uUGGCCGCCGuggcugcgAGCGGGuugcuCGCCGGg -3' miRNA: 3'- uACUGGUGGU--------UCGUCUucuu-GCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 23445 | 0.68 | 0.744149 |
Target: 5'- --cACCGCCAAGCAGAuugcuuucgcacGGGGCcucggcauugucgguGCCGAc -3' miRNA: 3'- uacUGGUGGUUCGUCU------------UCUUG---------------CGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 20165 | 0.68 | 0.749418 |
Target: 5'- cUGGCCACCGcgcccgccgccucGGCuGAcgAGAuCGCCGGu -3' miRNA: 3'- uACUGGUGGU-------------UCGuCU--UCUuGCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 28878 | 0.68 | 0.749418 |
Target: 5'- -gGGCCGgguacguguucgUCAAGCAGAuugucggcgacgaGGAACGCCGc -3' miRNA: 3'- uaCUGGU------------GGUUCGUCU-------------UCUUGCGGCu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 21091 | 0.68 | 0.750469 |
Target: 5'- -cGACgCugGCCAAGCucauGGAAGAAaaaGCCGAg -3' miRNA: 3'- uaCUG-G--UGGUUCG----UCUUCUUg--CGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 47264 | 0.68 | 0.760901 |
Target: 5'- gGUGACgcguuccagcgCACCGAGCAGAccgccguCGCCGGa -3' miRNA: 3'- -UACUG-----------GUGGUUCGUCUucuu---GCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 18766 | 0.67 | 0.768123 |
Target: 5'- cAUGGCCuGCCAcaucgcggugggcaAGCGGuggcAGGGACGCCGc -3' miRNA: 3'- -UACUGG-UGGU--------------UCGUC----UUCUUGCGGCu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 24881 | 0.67 | 0.781347 |
Target: 5'- cUGACCGCUaucGAGuCAGccGAGGACGgCGAg -3' miRNA: 3'- uACUGGUGG---UUC-GUC--UUCUUGCgGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 23678 | 0.67 | 0.781347 |
Target: 5'- -cGACC-CCGAGCAGgcGcACGCaGAc -3' miRNA: 3'- uaCUGGuGGUUCGUCuuCuUGCGgCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 55865 | 0.67 | 0.785363 |
Target: 5'- gGUGAacUCGCCGAGCGccucgccccgaccucGggGGucGCGCCGGg -3' miRNA: 3'- -UACU--GGUGGUUCGU---------------CuuCU--UGCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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