miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23298 5' -53.1 NC_005259.1 + 34534 0.67 0.810798
Target:  5'- cUGACCACCgAGGCAGccucAGcuUGCCGu -3'
miRNA:   3'- uACUGGUGG-UUCGUCu---UCuuGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 32554 0.67 0.810798
Target:  5'- uUGGCCGCCccggcGAGCGcGggGAuaGCGuuGGg -3'
miRNA:   3'- uACUGGUGG-----UUCGU-CuuCU--UGCggCU- -5'
23298 5' -53.1 NC_005259.1 + 38667 0.67 0.801159
Target:  5'- -cGACCACCucGCuGuuGGcCGCCGGg -3'
miRNA:   3'- uaCUGGUGGuuCGuCuuCUuGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 25278 0.67 0.801159
Target:  5'- gAUGGCCACCGuGCAcGAcaAGGACGgcaaagaauCCGAg -3'
miRNA:   3'- -UACUGGUGGUuCGU-CU--UCUUGC---------GGCU- -5'
23298 5' -53.1 NC_005259.1 + 5419 0.67 0.791338
Target:  5'- cUGGCCGCCAcGUcGAGGucuGCGCCc- -3'
miRNA:   3'- uACUGGUGGUuCGuCUUCu--UGCGGcu -5'
23298 5' -53.1 NC_005259.1 + 26021 0.67 0.791338
Target:  5'- gAUGGCCG-CAAGCGGGuuggccAGcAGCGCCGc -3'
miRNA:   3'- -UACUGGUgGUUCGUCU------UC-UUGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 42955 0.67 0.791338
Target:  5'- -aGGCCGCCGuuGUcGAacGGGAUGCCGGg -3'
miRNA:   3'- uaCUGGUGGUu-CGuCU--UCUUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 6120 0.67 0.790346
Target:  5'- -aGGCCGCCGcuacgcgGGCacugcaacgcguAGAAGAacucaggaaGCGCCGAa -3'
miRNA:   3'- uaCUGGUGGU-------UCG------------UCUUCU---------UGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 55865 0.67 0.785363
Target:  5'- gGUGAacUCGCCGAGCGccucgccccgaccucGggGGucGCGCCGGg -3'
miRNA:   3'- -UACU--GGUGGUUCGU---------------CuuCU--UGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 24881 0.67 0.781347
Target:  5'- cUGACCGCUaucGAGuCAGccGAGGACGgCGAg -3'
miRNA:   3'- uACUGGUGG---UUC-GUC--UUCUUGCgGCU- -5'
23298 5' -53.1 NC_005259.1 + 23678 0.67 0.781347
Target:  5'- -cGACC-CCGAGCAGgcGcACGCaGAc -3'
miRNA:   3'- uaCUGGuGGUUCGUCuuCuUGCGgCU- -5'
23298 5' -53.1 NC_005259.1 + 18766 0.67 0.768123
Target:  5'- cAUGGCCuGCCAcaucgcggugggcaAGCGGuggcAGGGACGCCGc -3'
miRNA:   3'- -UACUGG-UGGU--------------UCGUC----UUCUUGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 47264 0.68 0.760901
Target:  5'- gGUGACgcguuccagcgCACCGAGCAGAccgccguCGCCGGa -3'
miRNA:   3'- -UACUG-----------GUGGUUCGUCUucuu---GCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 21091 0.68 0.750469
Target:  5'- -cGACgCugGCCAAGCucauGGAAGAAaaaGCCGAg -3'
miRNA:   3'- uaCUG-G--UGGUUCG----UCUUCUUg--CGGCU- -5'
23298 5' -53.1 NC_005259.1 + 20165 0.68 0.749418
Target:  5'- cUGGCCACCGcgcccgccgccucGGCuGAcgAGAuCGCCGGu -3'
miRNA:   3'- uACUGGUGGU-------------UCGuCU--UCUuGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 28878 0.68 0.749418
Target:  5'- -gGGCCGgguacguguucgUCAAGCAGAuugucggcgacgaGGAACGCCGc -3'
miRNA:   3'- uaCUGGU------------GGUUCGUCU-------------UCUUGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 23445 0.68 0.744149
Target:  5'- --cACCGCCAAGCAGAuugcuuucgcacGGGGCcucggcauugucgguGCCGAc -3'
miRNA:   3'- uacUGGUGGUUCGUCU------------UCUUG---------------CGGCU- -5'
23298 5' -53.1 NC_005259.1 + 45530 0.68 0.739913
Target:  5'- uUGGCCGCCGuggcugcgAGCGGGuugcuCGCCGGg -3'
miRNA:   3'- uACUGGUGGU--------UCGUCUucuu-GCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 45402 0.68 0.729246
Target:  5'- --cGCCGCCGAGCGcGcuGAugGCCGc -3'
miRNA:   3'- uacUGGUGGUUCGU-CuuCUugCGGCu -5'
23298 5' -53.1 NC_005259.1 + 43221 0.68 0.729246
Target:  5'- cUGAcCCGCCGAGCuGAuGAGCgaGCUGAc -3'
miRNA:   3'- uACU-GGUGGUUCGuCUuCUUG--CGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.