Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23298 | 5' | -53.1 | NC_005259.1 | + | 10201 | 0.67 | 0.820245 |
Target: 5'- gAUGACgACCGGGCAGcucgaccaccacGAGAugGCg-- -3' miRNA: 3'- -UACUGgUGGUUCGUC------------UUCUugCGgcu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 5419 | 0.67 | 0.791338 |
Target: 5'- cUGGCCGCCAcGUcGAGGucuGCGCCc- -3' miRNA: 3'- uACUGGUGGUuCGuCUUCu--UGCGGcu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 42955 | 0.67 | 0.791338 |
Target: 5'- -aGGCCGCCGuuGUcGAacGGGAUGCCGGg -3' miRNA: 3'- uaCUGGUGGUu-CGuCU--UCUUGCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 26021 | 0.67 | 0.791338 |
Target: 5'- gAUGGCCG-CAAGCGGGuuggccAGcAGCGCCGc -3' miRNA: 3'- -UACUGGUgGUUCGUCU------UC-UUGCGGCu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 25278 | 0.67 | 0.801159 |
Target: 5'- gAUGGCCACCGuGCAcGAcaAGGACGgcaaagaauCCGAg -3' miRNA: 3'- -UACUGGUGGUuCGU-CU--UCUUGC---------GGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 38667 | 0.67 | 0.801159 |
Target: 5'- -cGACCACCucGCuGuuGGcCGCCGGg -3' miRNA: 3'- uaCUGGUGGuuCGuCuuCUuGCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 32554 | 0.67 | 0.810798 |
Target: 5'- uUGGCCGCCccggcGAGCGcGggGAuaGCGuuGGg -3' miRNA: 3'- uACUGGUGG-----UUCGU-CuuCU--UGCggCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 64928 | 0.67 | 0.820245 |
Target: 5'- gAUGACgaguGCC-AGCGcGAGGGugGCCGGg -3' miRNA: 3'- -UACUGg---UGGuUCGU-CUUCUugCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 30686 | 0.67 | 0.820245 |
Target: 5'- cUGGCCACCugAGGCAGcacGAGCguguuguugccGCCGAc -3' miRNA: 3'- uACUGGUGG--UUCGUCuu-CUUG-----------CGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 1888 | 0.67 | 0.819309 |
Target: 5'- -aGGCCGCCGAgaucgcgcgagcuGCcGAGGAagcGCGCCGc -3' miRNA: 3'- uaCUGGUGGUU-------------CGuCUUCU---UGCGGCu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 44944 | 0.67 | 0.820245 |
Target: 5'- cAUGgcACCAgCGGGCAGugcggucaucGGGAUGCCGAg -3' miRNA: 3'- -UAC--UGGUgGUUCGUCu---------UCUUGCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 14980 | 0.67 | 0.820245 |
Target: 5'- -aGGCCGCCGGGUAcAAGAcacagcAgGCCGGg -3' miRNA: 3'- uaCUGGUGGUUCGUcUUCU------UgCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 68405 | 0.68 | 0.718479 |
Target: 5'- -gGACCACCAAcGUAGAccuuGACGCCu- -3' miRNA: 3'- uaCUGGUGGUU-CGUCUuc--UUGCGGcu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 47264 | 0.68 | 0.760901 |
Target: 5'- gGUGACgcguuccagcgCACCGAGCAGAccgccguCGCCGGa -3' miRNA: 3'- -UACUG-----------GUGGUUCGUCUucuu---GCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 21091 | 0.68 | 0.750469 |
Target: 5'- -cGACgCugGCCAAGCucauGGAAGAAaaaGCCGAg -3' miRNA: 3'- uaCUG-G--UGGUUCG----UCUUCUUg--CGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 28878 | 0.68 | 0.749418 |
Target: 5'- -gGGCCGgguacguguucgUCAAGCAGAuugucggcgacgaGGAACGCCGc -3' miRNA: 3'- uaCUGGU------------GGUUCGUCU-------------UCUUGCGGCu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 20165 | 0.68 | 0.749418 |
Target: 5'- cUGGCCACCGcgcccgccgccucGGCuGAcgAGAuCGCCGGu -3' miRNA: 3'- uACUGGUGGU-------------UCGuCU--UCUuGCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 23445 | 0.68 | 0.744149 |
Target: 5'- --cACCGCCAAGCAGAuugcuuucgcacGGGGCcucggcauugucgguGCCGAc -3' miRNA: 3'- uacUGGUGGUUCGUCU------------UCUUG---------------CGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 45402 | 0.68 | 0.729246 |
Target: 5'- --cGCCGCCGAGCGcGcuGAugGCCGc -3' miRNA: 3'- uacUGGUGGUUCGU-CuuCUugCGGCu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 43221 | 0.68 | 0.729246 |
Target: 5'- cUGAcCCGCCGAGCuGAuGAGCgaGCUGAc -3' miRNA: 3'- uACU-GGUGGUUCGuCUuCUUG--CGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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