miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23298 5' -53.1 NC_005259.1 + 68405 0.68 0.718479
Target:  5'- -gGACCACCAAcGUAGAccuuGACGCCu- -3'
miRNA:   3'- uaCUGGUGGUU-CGUCUuc--UUGCGGcu -5'
23298 5' -53.1 NC_005259.1 + 28224 0.69 0.707625
Target:  5'- cGUGccGCCACCGucGGCGGcGGGGugGUCGAu -3'
miRNA:   3'- -UAC--UGGUGGU--UCGUC-UUCUugCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 43966 0.69 0.707625
Target:  5'- -gGGCCGCCGccugaccgagGGCGGugccgauGGACGCUGAa -3'
miRNA:   3'- uaCUGGUGGU----------UCGUCuu-----CUUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 63559 0.69 0.696695
Target:  5'- -cGGCCACCGacgcgacgAGCGGGAuauACGCCGc -3'
miRNA:   3'- uaCUGGUGGU--------UCGUCUUcu-UGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 52403 0.69 0.696695
Target:  5'- -gGGCCAUCGAGguGu-GGGCGCuCGAc -3'
miRNA:   3'- uaCUGGUGGUUCguCuuCUUGCG-GCU- -5'
23298 5' -53.1 NC_005259.1 + 46899 0.69 0.674654
Target:  5'- gAUGAgcgcCCGCCGAGCAGuccgcguGCGCCGc -3'
miRNA:   3'- -UACU----GGUGGUUCGUCuucu---UGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 26103 0.69 0.674654
Target:  5'- -aGACCcCCGAGCAGAccgccgccgccGGu-CGCCGGu -3'
miRNA:   3'- uaCUGGuGGUUCGUCU-----------UCuuGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 18580 0.69 0.663566
Target:  5'- -cGACC-CCGAGCAGAccGACcCCGAu -3'
miRNA:   3'- uaCUGGuGGUUCGUCUucUUGcGGCU- -5'
23298 5' -53.1 NC_005259.1 + 26509 0.7 0.64131
Target:  5'- --cGCCGCCcGGCgAGAAGAGCGCgGu -3'
miRNA:   3'- uacUGGUGGuUCG-UCUUCUUGCGgCu -5'
23298 5' -53.1 NC_005259.1 + 45622 0.7 0.64131
Target:  5'- gAUGcCCGCCGGGcCGGGcAGcGCGCCGGu -3'
miRNA:   3'- -UACuGGUGGUUC-GUCU-UCuUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 62711 0.7 0.61902
Target:  5'- -cGGCgAUCAGGCGGggGAucuCGCuCGAc -3'
miRNA:   3'- uaCUGgUGGUUCGUCuuCUu--GCG-GCU- -5'
23298 5' -53.1 NC_005259.1 + 40659 0.7 0.61902
Target:  5'- cAUGcUCGCCGAGCAGcgcGAGCGCCu- -3'
miRNA:   3'- -UACuGGUGGUUCGUCuu-CUUGCGGcu -5'
23298 5' -53.1 NC_005259.1 + 3033 0.7 0.61902
Target:  5'- cAUGACCucACCcGGCAGAu---CGCCGAc -3'
miRNA:   3'- -UACUGG--UGGuUCGUCUucuuGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 26063 0.71 0.574657
Target:  5'- cAUGccGCCGCCGAGCAGucccccGAGGccgcCGCCGAg -3'
miRNA:   3'- -UAC--UGGUGGUUCGUC------UUCUu---GCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 44556 0.71 0.552729
Target:  5'- -aGACCGgCAGGCAGc---GCGCCGAc -3'
miRNA:   3'- uaCUGGUgGUUCGUCuucuUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 56416 0.72 0.53106
Target:  5'- -cGGCCcgccgaGCuCAAGCAGAGcagcGAGCGCCGGg -3'
miRNA:   3'- uaCUGG------UG-GUUCGUCUU----CUUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 25346 0.72 0.53106
Target:  5'- cUGugC-CCGAGCc-GGGAACGCCGAa -3'
miRNA:   3'- uACugGuGGUUCGucUUCUUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 56906 0.72 0.499165
Target:  5'- cGUGGCCGCCGcAGCAGgcGugcccGCGUCGGu -3'
miRNA:   3'- -UACUGGUGGU-UCGUCuuCu----UGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 26435 0.72 0.488722
Target:  5'- -cGcACCGCCGAGCGGgcGGGCcgguggGCCGAu -3'
miRNA:   3'- uaC-UGGUGGUUCGUCuuCUUG------CGGCU- -5'
23298 5' -53.1 NC_005259.1 + 43029 0.73 0.468151
Target:  5'- gAUG-CCGCCGAGCAGGc---CGCCGAg -3'
miRNA:   3'- -UACuGGUGGUUCGUCUucuuGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.