miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23298 5' -53.1 NC_005259.1 + 44944 0.67 0.820245
Target:  5'- cAUGgcACCAgCGGGCAGugcggucaucGGGAUGCCGAg -3'
miRNA:   3'- -UAC--UGGUgGUUCGUCu---------UCUUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 44556 0.71 0.552729
Target:  5'- -aGACCGgCAGGCAGc---GCGCCGAc -3'
miRNA:   3'- uaCUGGUgGUUCGUCuucuUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 43966 0.69 0.707625
Target:  5'- -gGGCCGCCGccugaccgagGGCGGugccgauGGACGCUGAa -3'
miRNA:   3'- uaCUGGUGGU----------UCGUCuu-----CUUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 43221 0.68 0.729246
Target:  5'- cUGAcCCGCCGAGCuGAuGAGCgaGCUGAc -3'
miRNA:   3'- uACU-GGUGGUUCGuCUuCUUG--CGGCU- -5'
23298 5' -53.1 NC_005259.1 + 43029 0.73 0.468151
Target:  5'- gAUG-CCGCCGAGCAGGc---CGCCGAg -3'
miRNA:   3'- -UACuGGUGGUUCGUCUucuuGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 42955 0.67 0.791338
Target:  5'- -aGGCCGCCGuuGUcGAacGGGAUGCCGGg -3'
miRNA:   3'- uaCUGGUGGUu-CGuCU--UCUUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 40659 0.7 0.61902
Target:  5'- cAUGcUCGCCGAGCAGcgcGAGCGCCu- -3'
miRNA:   3'- -UACuGGUGGUUCGUCuu-CUUGCGGcu -5'
23298 5' -53.1 NC_005259.1 + 38720 0.66 0.837627
Target:  5'- uUGACCACCGcugccgccguaccGGCGGuGGccCGCCGc -3'
miRNA:   3'- uACUGGUGGU-------------UCGUCuUCuuGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 38667 0.67 0.801159
Target:  5'- -cGACCACCucGCuGuuGGcCGCCGGg -3'
miRNA:   3'- uaCUGGUGGuuCGuCuuCUuGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 37591 0.66 0.847329
Target:  5'- -cGAUCugCAAGCu---GAACGUCGGg -3'
miRNA:   3'- uaCUGGugGUUCGucuuCUUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 37275 0.66 0.829489
Target:  5'- -aGGCCGCCcGGCAGGacuugcauggcGGugccCGCCGGg -3'
miRNA:   3'- uaCUGGUGGuUCGUCU-----------UCuu--GCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 35637 0.66 0.829489
Target:  5'- -gGGCCGCCGccgcugccgcuGGC-GAGGGugGCCa- -3'
miRNA:   3'- uaCUGGUGGU-----------UCGuCUUCUugCGGcu -5'
23298 5' -53.1 NC_005259.1 + 34534 0.67 0.810798
Target:  5'- cUGACCACCgAGGCAGccucAGcuUGCCGu -3'
miRNA:   3'- uACUGGUGG-UUCGUCu---UCuuGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 32554 0.67 0.810798
Target:  5'- uUGGCCGCCccggcGAGCGcGggGAuaGCGuuGGg -3'
miRNA:   3'- uACUGGUGG-----UUCGU-CuuCU--UGCggCU- -5'
23298 5' -53.1 NC_005259.1 + 30686 0.67 0.820245
Target:  5'- cUGGCCACCugAGGCAGcacGAGCguguuguugccGCCGAc -3'
miRNA:   3'- uACUGGUGG--UUCGUCuu-CUUG-----------CGGCU- -5'
23298 5' -53.1 NC_005259.1 + 30547 0.78 0.249626
Target:  5'- cAUGGCCACCGAGCGGuuGuuGACGCCc- -3'
miRNA:   3'- -UACUGGUGGUUCGUCuuC--UUGCGGcu -5'
23298 5' -53.1 NC_005259.1 + 28878 0.68 0.749418
Target:  5'- -gGGCCGgguacguguucgUCAAGCAGAuugucggcgacgaGGAACGCCGc -3'
miRNA:   3'- uaCUGGU------------GGUUCGUCU-------------UCUUGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 28224 0.69 0.707625
Target:  5'- cGUGccGCCACCGucGGCGGcGGGGugGUCGAu -3'
miRNA:   3'- -UAC--UGGUGGU--UCGUC-UUCUugCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 26509 0.7 0.64131
Target:  5'- --cGCCGCCcGGCgAGAAGAGCGCgGu -3'
miRNA:   3'- uacUGGUGGuUCG-UCUUCUUGCGgCu -5'
23298 5' -53.1 NC_005259.1 + 26435 0.72 0.488722
Target:  5'- -cGcACCGCCGAGCGGgcGGGCcgguggGCCGAu -3'
miRNA:   3'- uaC-UGGUGGUUCGUCuuCUUG------CGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.