miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23298 5' -53.1 NC_005259.1 + 68405 0.68 0.718479
Target:  5'- -gGACCACCAAcGUAGAccuuGACGCCu- -3'
miRNA:   3'- uaCUGGUGGUU-CGUCUuc--UUGCGGcu -5'
23298 5' -53.1 NC_005259.1 + 64928 0.67 0.820245
Target:  5'- gAUGACgaguGCC-AGCGcGAGGGugGCCGGg -3'
miRNA:   3'- -UACUGg---UGGuUCGU-CUUCUugCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 63559 0.69 0.696695
Target:  5'- -cGGCCACCGacgcgacgAGCGGGAuauACGCCGc -3'
miRNA:   3'- uaCUGGUGGU--------UCGUCUUcu-UGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 62711 0.7 0.61902
Target:  5'- -cGGCgAUCAGGCGGggGAucuCGCuCGAc -3'
miRNA:   3'- uaCUGgUGGUUCGUCuuCUu--GCG-GCU- -5'
23298 5' -53.1 NC_005259.1 + 58589 0.66 0.864243
Target:  5'- -cGGCUGCCGGGcCGGAucuuuucGAGCGCCu- -3'
miRNA:   3'- uaCUGGUGGUUC-GUCUu------CUUGCGGcu -5'
23298 5' -53.1 NC_005259.1 + 58423 0.75 0.338414
Target:  5'- -aGAuCCACCGGGCAGAuu-GCGCUGAu -3'
miRNA:   3'- uaCU-GGUGGUUCGUCUucuUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 56906 0.72 0.499165
Target:  5'- cGUGGCCGCCGcAGCAGgcGugcccGCGUCGGu -3'
miRNA:   3'- -UACUGGUGGU-UCGUCuuCu----UGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 56416 0.72 0.53106
Target:  5'- -cGGCCcgccgaGCuCAAGCAGAGcagcGAGCGCCGGg -3'
miRNA:   3'- uaCUGG------UG-GUUCGUCUU----CUUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 56075 0.66 0.83852
Target:  5'- -aGACCGUCGAGCAGAucGGugcuCGUCGGg -3'
miRNA:   3'- uaCUGGUGGUUCGUCU--UCuu--GCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 55865 0.67 0.785363
Target:  5'- gGUGAacUCGCCGAGCGccucgccccgaccucGggGGucGCGCCGGg -3'
miRNA:   3'- -UACU--GGUGGUUCGU---------------CuuCU--UGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 55539 0.66 0.83852
Target:  5'- --cGCCGCCucguuGGCGucGAGGAUGCCGAa -3'
miRNA:   3'- uacUGGUGGu----UCGUc-UUCUUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 55460 0.66 0.829489
Target:  5'- -gGGCCACCcguGCAGggGuguACGCguaGAu -3'
miRNA:   3'- uaCUGGUGGuu-CGUCuuCu--UGCGg--CU- -5'
23298 5' -53.1 NC_005259.1 + 52403 0.69 0.696695
Target:  5'- -gGGCCAUCGAGguGu-GGGCGCuCGAc -3'
miRNA:   3'- uaCUGGUGGUUCguCuuCUUGCG-GCU- -5'
23298 5' -53.1 NC_005259.1 + 51738 0.66 0.855906
Target:  5'- gAUGGCCACCGccacgcucucGGCAgcguugcgcucGgcGAGCGCCu- -3'
miRNA:   3'- -UACUGGUGGU----------UCGU-----------CuuCUUGCGGcu -5'
23298 5' -53.1 NC_005259.1 + 48052 0.66 0.864243
Target:  5'- gGUGGCCAC--GGCGGGu-AGCGCCGc -3'
miRNA:   3'- -UACUGGUGguUCGUCUucUUGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 47264 0.68 0.760901
Target:  5'- gGUGACgcguuccagcgCACCGAGCAGAccgccguCGCCGGa -3'
miRNA:   3'- -UACUG-----------GUGGUUCGUCUucuu---GCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 46899 0.69 0.674654
Target:  5'- gAUGAgcgcCCGCCGAGCAGuccgcguGCGCCGc -3'
miRNA:   3'- -UACU----GGUGGUUCGUCuucu---UGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 45622 0.7 0.64131
Target:  5'- gAUGcCCGCCGGGcCGGGcAGcGCGCCGGu -3'
miRNA:   3'- -UACuGGUGGUUC-GUCU-UCuUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 45530 0.68 0.739913
Target:  5'- uUGGCCGCCGuggcugcgAGCGGGuugcuCGCCGGg -3'
miRNA:   3'- uACUGGUGGU--------UCGUCUucuu-GCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 45402 0.68 0.729246
Target:  5'- --cGCCGCCGAGCGcGcuGAugGCCGc -3'
miRNA:   3'- uacUGGUGGUUCGU-CuuCUugCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.