Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23298 | 5' | -53.1 | NC_005259.1 | + | 1888 | 0.67 | 0.819309 |
Target: 5'- -aGGCCGCCGAgaucgcgcgagcuGCcGAGGAagcGCGCCGc -3' miRNA: 3'- uaCUGGUGGUU-------------CGuCUUCU---UGCGGCu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 3033 | 0.7 | 0.61902 |
Target: 5'- cAUGACCucACCcGGCAGAu---CGCCGAc -3' miRNA: 3'- -UACUGG--UGGuUCGUCUucuuGCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 4972 | 0.66 | 0.855906 |
Target: 5'- -gGuauCCGCCGAGUucGGccGAugGCCGGg -3' miRNA: 3'- uaCu--GGUGGUUCG--UCuuCUugCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 5419 | 0.67 | 0.791338 |
Target: 5'- cUGGCCGCCAcGUcGAGGucuGCGCCc- -3' miRNA: 3'- uACUGGUGGUuCGuCUUCu--UGCGGcu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 5477 | 0.66 | 0.83852 |
Target: 5'- aAUGGCCggugcaauagcGCCGAGC-GAGGAucgagcuacgcGCGCCGc -3' miRNA: 3'- -UACUGG-----------UGGUUCGuCUUCU-----------UGCGGCu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 5974 | 0.73 | 0.458033 |
Target: 5'- -cGACCACCAacuacacgGGCAGccGAGAACGCUc- -3' miRNA: 3'- uaCUGGUGGU--------UCGUC--UUCUUGCGGcu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 6120 | 0.67 | 0.790346 |
Target: 5'- -aGGCCGCCGcuacgcgGGCacugcaacgcguAGAAGAacucaggaaGCGCCGAa -3' miRNA: 3'- uaCUGGUGGU-------UCG------------UCUUCU---------UGCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 10201 | 0.67 | 0.820245 |
Target: 5'- gAUGACgACCGGGCAGcucgaccaccacGAGAugGCg-- -3' miRNA: 3'- -UACUGgUGGUUCGUC------------UUCUugCGgcu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 11017 | 0.74 | 0.390722 |
Target: 5'- -gGACgCGCCgAGGCAGGAGuuCGCCGGg -3' miRNA: 3'- uaCUG-GUGG-UUCGUCUUCuuGCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 13536 | 0.75 | 0.338414 |
Target: 5'- -cGGCCACCAAGCAGuucgcgauguGGccCGCCGAc -3' miRNA: 3'- uaCUGGUGGUUCGUCu---------UCuuGCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 14980 | 0.67 | 0.820245 |
Target: 5'- -aGGCCGCCGGGUAcAAGAcacagcAgGCCGGg -3' miRNA: 3'- uaCUGGUGGUUCGUcUUCU------UgCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 16568 | 0.74 | 0.399939 |
Target: 5'- -cGcCCACCGGGCAGAu---CGCCGAg -3' miRNA: 3'- uaCuGGUGGUUCGUCUucuuGCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 16707 | 0.77 | 0.291384 |
Target: 5'- gGUGACCGCCGAGCAGGuc-GCGCUc- -3' miRNA: 3'- -UACUGGUGGUUCGUCUucuUGCGGcu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 17282 | 0.66 | 0.864243 |
Target: 5'- -cGACCGCUAuuugaAGCGGuacuuGAcccuguACGCCGAg -3' miRNA: 3'- uaCUGGUGGU-----UCGUCuu---CU------UGCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 18580 | 0.69 | 0.663566 |
Target: 5'- -cGACC-CCGAGCAGAccGACcCCGAu -3' miRNA: 3'- uaCUGGuGGUUCGUCUucUUGcGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 18766 | 0.67 | 0.768123 |
Target: 5'- cAUGGCCuGCCAcaucgcggugggcaAGCGGuggcAGGGACGCCGc -3' miRNA: 3'- -UACUGG-UGGU--------------UCGUC----UUCUUGCGGCu -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 19284 | 1.07 | 0.00239 |
Target: 5'- cAUGACCACCAAGCAGAAGAACGCCGAg -3' miRNA: 3'- -UACUGGUGGUUCGUCUUCUUGCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 20165 | 0.68 | 0.749418 |
Target: 5'- cUGGCCACCGcgcccgccgccucGGCuGAcgAGAuCGCCGGu -3' miRNA: 3'- uACUGGUGGU-------------UCGuCU--UCUuGCGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 21091 | 0.68 | 0.750469 |
Target: 5'- -cGACgCugGCCAAGCucauGGAAGAAaaaGCCGAg -3' miRNA: 3'- uaCUG-G--UGGUUCG----UCUUCUUg--CGGCU- -5' |
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23298 | 5' | -53.1 | NC_005259.1 | + | 23445 | 0.68 | 0.744149 |
Target: 5'- --cACCGCCAAGCAGAuugcuuucgcacGGGGCcucggcauugucgguGCCGAc -3' miRNA: 3'- uacUGGUGGUUCGUCU------------UCUUG---------------CGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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