miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23298 5' -53.1 NC_005259.1 + 1888 0.67 0.819309
Target:  5'- -aGGCCGCCGAgaucgcgcgagcuGCcGAGGAagcGCGCCGc -3'
miRNA:   3'- uaCUGGUGGUU-------------CGuCUUCU---UGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 3033 0.7 0.61902
Target:  5'- cAUGACCucACCcGGCAGAu---CGCCGAc -3'
miRNA:   3'- -UACUGG--UGGuUCGUCUucuuGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 4972 0.66 0.855906
Target:  5'- -gGuauCCGCCGAGUucGGccGAugGCCGGg -3'
miRNA:   3'- uaCu--GGUGGUUCG--UCuuCUugCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 5419 0.67 0.791338
Target:  5'- cUGGCCGCCAcGUcGAGGucuGCGCCc- -3'
miRNA:   3'- uACUGGUGGUuCGuCUUCu--UGCGGcu -5'
23298 5' -53.1 NC_005259.1 + 5477 0.66 0.83852
Target:  5'- aAUGGCCggugcaauagcGCCGAGC-GAGGAucgagcuacgcGCGCCGc -3'
miRNA:   3'- -UACUGG-----------UGGUUCGuCUUCU-----------UGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 5974 0.73 0.458033
Target:  5'- -cGACCACCAacuacacgGGCAGccGAGAACGCUc- -3'
miRNA:   3'- uaCUGGUGGU--------UCGUC--UUCUUGCGGcu -5'
23298 5' -53.1 NC_005259.1 + 6120 0.67 0.790346
Target:  5'- -aGGCCGCCGcuacgcgGGCacugcaacgcguAGAAGAacucaggaaGCGCCGAa -3'
miRNA:   3'- uaCUGGUGGU-------UCG------------UCUUCU---------UGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 10201 0.67 0.820245
Target:  5'- gAUGACgACCGGGCAGcucgaccaccacGAGAugGCg-- -3'
miRNA:   3'- -UACUGgUGGUUCGUC------------UUCUugCGgcu -5'
23298 5' -53.1 NC_005259.1 + 11017 0.74 0.390722
Target:  5'- -gGACgCGCCgAGGCAGGAGuuCGCCGGg -3'
miRNA:   3'- uaCUG-GUGG-UUCGUCUUCuuGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 13536 0.75 0.338414
Target:  5'- -cGGCCACCAAGCAGuucgcgauguGGccCGCCGAc -3'
miRNA:   3'- uaCUGGUGGUUCGUCu---------UCuuGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 14980 0.67 0.820245
Target:  5'- -aGGCCGCCGGGUAcAAGAcacagcAgGCCGGg -3'
miRNA:   3'- uaCUGGUGGUUCGUcUUCU------UgCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 16568 0.74 0.399939
Target:  5'- -cGcCCACCGGGCAGAu---CGCCGAg -3'
miRNA:   3'- uaCuGGUGGUUCGUCUucuuGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 16707 0.77 0.291384
Target:  5'- gGUGACCGCCGAGCAGGuc-GCGCUc- -3'
miRNA:   3'- -UACUGGUGGUUCGUCUucuUGCGGcu -5'
23298 5' -53.1 NC_005259.1 + 17282 0.66 0.864243
Target:  5'- -cGACCGCUAuuugaAGCGGuacuuGAcccuguACGCCGAg -3'
miRNA:   3'- uaCUGGUGGU-----UCGUCuu---CU------UGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 18580 0.69 0.663566
Target:  5'- -cGACC-CCGAGCAGAccGACcCCGAu -3'
miRNA:   3'- uaCUGGuGGUUCGUCUucUUGcGGCU- -5'
23298 5' -53.1 NC_005259.1 + 18766 0.67 0.768123
Target:  5'- cAUGGCCuGCCAcaucgcggugggcaAGCGGuggcAGGGACGCCGc -3'
miRNA:   3'- -UACUGG-UGGU--------------UCGUC----UUCUUGCGGCu -5'
23298 5' -53.1 NC_005259.1 + 19284 1.07 0.00239
Target:  5'- cAUGACCACCAAGCAGAAGAACGCCGAg -3'
miRNA:   3'- -UACUGGUGGUUCGUCUUCUUGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 20165 0.68 0.749418
Target:  5'- cUGGCCACCGcgcccgccgccucGGCuGAcgAGAuCGCCGGu -3'
miRNA:   3'- uACUGGUGGU-------------UCGuCU--UCUuGCGGCU- -5'
23298 5' -53.1 NC_005259.1 + 21091 0.68 0.750469
Target:  5'- -cGACgCugGCCAAGCucauGGAAGAAaaaGCCGAg -3'
miRNA:   3'- uaCUG-G--UGGUUCG----UCUUCUUg--CGGCU- -5'
23298 5' -53.1 NC_005259.1 + 23445 0.68 0.744149
Target:  5'- --cACCGCCAAGCAGAuugcuuucgcacGGGGCcucggcauugucgguGCCGAc -3'
miRNA:   3'- uacUGGUGGUUCGUCU------------UCUUG---------------CGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.