miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2330 5' -54.6 NC_001416.1 + 16408 0.66 0.72304
Target:  5'- aGACGUu---UCCCcaUGCCGUAgCGCg -3'
miRNA:   3'- -CUGCAuuauAGGGucGCGGCGUgGCG- -5'
2330 5' -54.6 NC_001416.1 + 8231 0.66 0.72304
Target:  5'- cGCGgguUGUCCUuucGCGCCGCAggcgUCGUa -3'
miRNA:   3'- cUGCauuAUAGGGu--CGCGGCGU----GGCG- -5'
2330 5' -54.6 NC_001416.1 + 40274 0.66 0.72304
Target:  5'- gGACGcaUAAUAgcuUCUguGCGCCGgacguUGCCGCg -3'
miRNA:   3'- -CUGC--AUUAU---AGGguCGCGGC-----GUGGCG- -5'
2330 5' -54.6 NC_001416.1 + 1191 0.66 0.716549
Target:  5'- aGCGUGuUAUCCCGGUGCUuuuugccauaccacgGgGCCaGCg -3'
miRNA:   3'- cUGCAUuAUAGGGUCGCGG---------------CgUGG-CG- -5'
2330 5' -54.6 NC_001416.1 + 15986 0.66 0.701287
Target:  5'- gGugGUGAUGgguaaCCuGcCGCCGCGcCCGUu -3'
miRNA:   3'- -CugCAUUAUag---GGuC-GCGGCGU-GGCG- -5'
2330 5' -54.6 NC_001416.1 + 16613 0.66 0.701287
Target:  5'- uGugGUGAUG-CCgGaugauggcGCGCCGUuCCGCu -3'
miRNA:   3'- -CugCAUUAUaGGgU--------CGCGGCGuGGCG- -5'
2330 5' -54.6 NC_001416.1 + 7901 0.66 0.6903
Target:  5'- cGAUGgucagcGUGUCuCCA-CGCCGCagcuGCCGCa -3'
miRNA:   3'- -CUGCau----UAUAG-GGUcGCGGCG----UGGCG- -5'
2330 5' -54.6 NC_001416.1 + 5504 0.67 0.65704
Target:  5'- cGCGUucacGUCCgGcuGCGCCGCGCUGg -3'
miRNA:   3'- cUGCAuua-UAGGgU--CGCGGCGUGGCg -5'
2330 5' -54.6 NC_001416.1 + 17466 0.67 0.65704
Target:  5'- --gGU-GUGUCCCAucGCGCCaGCACCu- -3'
miRNA:   3'- cugCAuUAUAGGGU--CGCGG-CGUGGcg -5'
2330 5' -54.6 NC_001416.1 + 8024 0.67 0.642544
Target:  5'- cGGCGgug---CCUGGUGCCGCcgcaauggccauuaACCGCg -3'
miRNA:   3'- -CUGCauuauaGGGUCGCGGCG--------------UGGCG- -5'
2330 5' -54.6 NC_001416.1 + 16327 0.68 0.590158
Target:  5'- aACGUuccGUCCCAGauacCGCUGUauuGCCGCg -3'
miRNA:   3'- cUGCAuuaUAGGGUC----GCGGCG---UGGCG- -5'
2330 5' -54.6 NC_001416.1 + 3777 0.7 0.451838
Target:  5'- cGCGUAuUAcgCCgCAGCGCCGguCCGg -3'
miRNA:   3'- cUGCAUuAUa-GG-GUCGCGGCguGGCg -5'
2330 5' -54.6 NC_001416.1 + 17600 0.71 0.41284
Target:  5'- -cUGUAGUucCCCAGCGCCaGUugCGUg -3'
miRNA:   3'- cuGCAUUAuaGGGUCGCGG-CGugGCG- -5'
2330 5' -54.6 NC_001416.1 + 17598 0.71 0.403419
Target:  5'- cGGCGUcGGUAUCguuCCGGauuGCCGCACCGg -3'
miRNA:   3'- -CUGCA-UUAUAG---GGUCg--CGGCGUGGCg -5'
2330 5' -54.6 NC_001416.1 + 17860 0.71 0.394136
Target:  5'- uGGCGgc-UAUCCaguaCAGCGCCGUACCa- -3'
miRNA:   3'- -CUGCauuAUAGG----GUCGCGGCGUGGcg -5'
2330 5' -54.6 NC_001416.1 + 5092 0.72 0.353256
Target:  5'- aGCGUGAUuuccacacccuguuUCuCCAGCGCaGCACCGUa -3'
miRNA:   3'- cUGCAUUAu-------------AG-GGUCGCGgCGUGGCG- -5'
2330 5' -54.6 NC_001416.1 + 3499 1.11 0.000691
Target:  5'- uGACGUAAUAUCCCAGCGCCGCACCGCu -3'
miRNA:   3'- -CUGCAUUAUAGGGUCGCGGCGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.