miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23301 5' -61.3 NC_005259.1 + 47952 0.66 0.479298
Target:  5'- -cGGCGGUGcCGauGGcCGCCGCGCCg -3'
miRNA:   3'- guUCGCCACcGUc-CCuGCGGCGUGGg -5'
23301 5' -61.3 NC_005259.1 + 27999 0.66 0.479298
Target:  5'- --uGCGGgugccggGGCGGGGuCGCCgggguuGCGCgCg -3'
miRNA:   3'- guuCGCCa------CCGUCCCuGCGG------CGUGgG- -5'
23301 5' -61.3 NC_005259.1 + 25066 0.66 0.469727
Target:  5'- uCAGGCaagGGUGGCGcugccaccGcCGCUGCGCCCg -3'
miRNA:   3'- -GUUCG---CCACCGUcc------CuGCGGCGUGGG- -5'
23301 5' -61.3 NC_005259.1 + 55343 0.66 0.450882
Target:  5'- -cAGCGGUGGC---GAUGCCGaaCGCCUg -3'
miRNA:   3'- guUCGCCACCGuccCUGCGGC--GUGGG- -5'
23301 5' -61.3 NC_005259.1 + 50278 0.66 0.450882
Target:  5'- --cGuCGGUGGCGGGaACGUCGUGCa- -3'
miRNA:   3'- guuC-GCCACCGUCCcUGCGGCGUGgg -5'
23301 5' -61.3 NC_005259.1 + 11403 0.66 0.450882
Target:  5'- uCAAGCGGUuucggcucguGGCcggugcaacGGGGAUGCuugggccgcuCGCugCCg -3'
miRNA:   3'- -GUUCGCCA----------CCG---------UCCCUGCG----------GCGugGG- -5'
23301 5' -61.3 NC_005259.1 + 41794 0.67 0.43155
Target:  5'- gCGAGCaGUcGGCAGGcgguuugcacuccGACGagUGCACCCa -3'
miRNA:   3'- -GUUCGcCA-CCGUCC-------------CUGCg-GCGUGGG- -5'
23301 5' -61.3 NC_005259.1 + 20454 0.67 0.413597
Target:  5'- aCGAGCcggGGUGGCucGGAugacCGCCGUcgaccucgacaccGCCCg -3'
miRNA:   3'- -GUUCG---CCACCGucCCU----GCGGCG-------------UGGG- -5'
23301 5' -61.3 NC_005259.1 + 26651 0.67 0.40567
Target:  5'- --uGCGcucGGCAGGuuCGgCGCACCCg -3'
miRNA:   3'- guuCGCca-CCGUCCcuGCgGCGUGGG- -5'
23301 5' -61.3 NC_005259.1 + 61945 0.67 0.400439
Target:  5'- --cGCgGGUGcCGGGGccaccgcagccucacGCGCCGCugCCu -3'
miRNA:   3'- guuCG-CCACcGUCCC---------------UGCGGCGugGG- -5'
23301 5' -61.3 NC_005259.1 + 58344 0.67 0.388401
Target:  5'- uCAGGuCGGUGGCcucGGGcACGUCGCAg-- -3'
miRNA:   3'- -GUUC-GCCACCGu--CCC-UGCGGCGUggg -5'
23301 5' -61.3 NC_005259.1 + 19851 0.68 0.379111
Target:  5'- --cGCGcucgguGUGGCGcucgcgcccgccGGGAucgccgaCGCCGCGCCCa -3'
miRNA:   3'- guuCGC------CACCGU------------CCCU-------GCGGCGUGGG- -5'
23301 5' -61.3 NC_005259.1 + 24113 0.68 0.347393
Target:  5'- ---aUGGgaccgGGCGGGGAcuacacCGCCGcCGCCCu -3'
miRNA:   3'- guucGCCa----CCGUCCCU------GCGGC-GUGGG- -5'
23301 5' -61.3 NC_005259.1 + 58563 0.68 0.339573
Target:  5'- uCGGGCGGUugGGCcGGaucgcGGCGCgGCugCCg -3'
miRNA:   3'- -GUUCGCCA--CCGuCC-----CUGCGgCGugGG- -5'
23301 5' -61.3 NC_005259.1 + 32526 0.69 0.33188
Target:  5'- gAGGCGGgcGGCAGGcuuGACcuugcuguugGCCGC-CCCg -3'
miRNA:   3'- gUUCGCCa-CCGUCC---CUG----------CGGCGuGGG- -5'
23301 5' -61.3 NC_005259.1 + 63645 0.69 0.309576
Target:  5'- gCGAGCuGcucgcUGGCcGGGACGCCGgACaCCu -3'
miRNA:   3'- -GUUCGcC-----ACCGuCCCUGCGGCgUG-GG- -5'
23301 5' -61.3 NC_005259.1 + 58796 0.69 0.3024
Target:  5'- gAGGCGGUgauugccucGGCGGGcucGCGCUgcucgGCACCCu -3'
miRNA:   3'- gUUCGCCA---------CCGUCCc--UGCGG-----CGUGGG- -5'
23301 5' -61.3 NC_005259.1 + 50438 0.69 0.3024
Target:  5'- -cAGCGGUgcgGGCucGGGGuCGCCGguCUCg -3'
miRNA:   3'- guUCGCCA---CCG--UCCCuGCGGCguGGG- -5'
23301 5' -61.3 NC_005259.1 + 18381 0.69 0.295352
Target:  5'- aGGGCGGUaGCgAGGGAgacgagcaccuCGCCGaGCCCg -3'
miRNA:   3'- gUUCGCCAcCG-UCCCU-----------GCGGCgUGGG- -5'
23301 5' -61.3 NC_005259.1 + 32099 0.69 0.288433
Target:  5'- cCGGGCGGUGGC-GGGAaauaGCUcuCACCg -3'
miRNA:   3'- -GUUCGCCACCGuCCCUg---CGGc-GUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.