miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23302 3' -64 NC_005259.1 + 9520 0.67 0.337861
Target:  5'- gCGCgCGU-CGaCCGCCGCCGGgucaCCgGAg -3'
miRNA:   3'- aGCG-GCAuGC-GGCGGCGGCUg---GGgCU- -5'
23302 3' -64 NC_005259.1 + 37242 0.67 0.335616
Target:  5'- gUGCCGgaUugGCUGCCGCCGuuGCcaggcuugaggccgCCCGGc -3'
miRNA:   3'- aGCGGC--AugCGGCGGCGGC--UG--------------GGGCU- -5'
23302 3' -64 NC_005259.1 + 5188 0.67 0.333382
Target:  5'- cUCuCCG-ACGCCGCCGCCaagcucaccGcgcucgccgagcaauACCCCGAc -3'
miRNA:   3'- -AGcGGCaUGCGGCGGCGG---------C---------------UGGGGCU- -5'
23302 3' -64 NC_005259.1 + 67749 0.67 0.33042
Target:  5'- -gGCCacUAgGCCGCC-CCGGCCaCCGGc -3'
miRNA:   3'- agCGGc-AUgCGGCGGcGGCUGG-GGCU- -5'
23302 3' -64 NC_005259.1 + 2989 0.67 0.33042
Target:  5'- gCGuCCGcaacAUGCgCGCCGCCGACgCCa- -3'
miRNA:   3'- aGC-GGCa---UGCG-GCGGCGGCUGgGGcu -5'
23302 3' -64 NC_005259.1 + 26778 0.67 0.328211
Target:  5'- cCGCCgGUgccucggaacaccaGCGCCGCCGCCcgguuGGCCgguaCCGGc -3'
miRNA:   3'- aGCGG-CA--------------UGCGGCGGCGG-----CUGG----GGCU- -5'
23302 3' -64 NC_005259.1 + 11445 0.67 0.323099
Target:  5'- -gGCCGcuCGCUGCCGCCgGugCCUa- -3'
miRNA:   3'- agCGGCauGCGGCGGCGG-CugGGGcu -5'
23302 3' -64 NC_005259.1 + 40619 0.67 0.320927
Target:  5'- cUGCCGUcgcgcacgaacucgAUGCCGUCGCCGAgaaagucaugcuCgCCGAg -3'
miRNA:   3'- aGCGGCA--------------UGCGGCGGCGGCU------------GgGGCU- -5'
23302 3' -64 NC_005259.1 + 52042 0.67 0.308823
Target:  5'- gCGCUGU-CGCCGUcgaggaucgcgaCGCCGuCCuCCGAc -3'
miRNA:   3'- aGCGGCAuGCGGCG------------GCGGCuGG-GGCU- -5'
23302 3' -64 NC_005259.1 + 42809 0.67 0.306724
Target:  5'- -gGCgCGUGCacugugguauugcuGCCGCCGCCGAaaCCGc -3'
miRNA:   3'- agCG-GCAUG--------------CGGCGGCGGCUggGGCu -5'
23302 3' -64 NC_005259.1 + 6354 0.68 0.301868
Target:  5'- gUGCCGUACGUgcgcacguUGUCGCCGGgCgCGAu -3'
miRNA:   3'- aGCGGCAUGCG--------GCGGCGGCUgGgGCU- -5'
23302 3' -64 NC_005259.1 + 38937 0.68 0.301868
Target:  5'- gUUGCUGUGC-CCGgUGCCGcuGCCgCCGAg -3'
miRNA:   3'- -AGCGGCAUGcGGCgGCGGC--UGG-GGCU- -5'
23302 3' -64 NC_005259.1 + 3901 0.68 0.301868
Target:  5'- aUCGUCGccAUGCUGCCGUaccUGAaCCCCGGc -3'
miRNA:   3'- -AGCGGCa-UGCGGCGGCG---GCU-GGGGCU- -5'
23302 3' -64 NC_005259.1 + 66047 0.68 0.301868
Target:  5'- cUCGaCGUagACGCCGCCGUgGGCCUg-- -3'
miRNA:   3'- -AGCgGCA--UGCGGCGGCGgCUGGGgcu -5'
23302 3' -64 NC_005259.1 + 25947 0.68 0.301868
Target:  5'- aCGCCgGUGC-CCGgcCCGCCGACgCCUGc -3'
miRNA:   3'- aGCGG-CAUGcGGC--GGCGGCUG-GGGCu -5'
23302 3' -64 NC_005259.1 + 47957 0.68 0.295033
Target:  5'- gUGCCGaugGCCGCCGCgCcGCCCgCGAa -3'
miRNA:   3'- aGCGGCaugCGGCGGCG-GcUGGG-GCU- -5'
23302 3' -64 NC_005259.1 + 39320 0.68 0.295033
Target:  5'- cCGCUGUcGCGCCGCUGgUGACCgucaacUCGAc -3'
miRNA:   3'- aGCGGCA-UGCGGCGGCgGCUGG------GGCU- -5'
23302 3' -64 NC_005259.1 + 32547 0.68 0.295033
Target:  5'- cUUGCUGUugGCCGCC-CCGGCgagCgCGGg -3'
miRNA:   3'- -AGCGGCAugCGGCGGcGGCUG---GgGCU- -5'
23302 3' -64 NC_005259.1 + 19874 0.68 0.295033
Target:  5'- cCGCCGggauCGCCGaCGCCGcGCCCa-- -3'
miRNA:   3'- aGCGGCau--GCGGCgGCGGC-UGGGgcu -5'
23302 3' -64 NC_005259.1 + 48173 0.68 0.295033
Target:  5'- cCGCCcc-CGCCGCCGCCGGgugucggaCCGGg -3'
miRNA:   3'- aGCGGcauGCGGCGGCGGCUgg------GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.