miRNA display CGI


Results 21 - 40 of 144 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23302 3' -64 NC_005259.1 + 61966 0.66 0.376877
Target:  5'- -aGCCucacGCGCCGCUGCCucGACCuuGc -3'
miRNA:   3'- agCGGca--UGCGGCGGCGG--CUGGggCu -5'
23302 3' -64 NC_005259.1 + 17337 0.66 0.376877
Target:  5'- gUGCCGgucaACGUCGCCGUCGAggUCGGc -3'
miRNA:   3'- aGCGGCa---UGCGGCGGCGGCUggGGCU- -5'
23302 3' -64 NC_005259.1 + 47375 0.66 0.376877
Target:  5'- gUUGCCGaACGCaCGCgCGCCguugaGACCCuCGu -3'
miRNA:   3'- -AGCGGCaUGCG-GCG-GCGG-----CUGGG-GCu -5'
23302 3' -64 NC_005259.1 + 45250 0.66 0.368836
Target:  5'- gUCGCCGgucauCGCgaaCGCCGUCaacGCCUCGAu -3'
miRNA:   3'- -AGCGGCau---GCG---GCGGCGGc--UGGGGCU- -5'
23302 3' -64 NC_005259.1 + 6945 0.66 0.368836
Target:  5'- -gGCCGa--GCuCGCCGCCGAcggcauccacacCCUCGAu -3'
miRNA:   3'- agCGGCaugCG-GCGGCGGCU------------GGGGCU- -5'
23302 3' -64 NC_005259.1 + 8820 0.66 0.3617
Target:  5'- gCGCCGggccggugaguugacGCGCUG-CGCCGACCaCCa- -3'
miRNA:   3'- aGCGGCa--------------UGCGGCgGCGGCUGG-GGcu -5'
23302 3' -64 NC_005259.1 + 7326 0.66 0.360913
Target:  5'- cCGCCGU-CGCCGaguaCGUCGAggCCGGa -3'
miRNA:   3'- aGCGGCAuGCGGCg---GCGGCUggGGCU- -5'
23302 3' -64 NC_005259.1 + 19361 0.66 0.360913
Target:  5'- aCGCCGggaucaagGCcCCGCUGaucaCCGGCCCCa- -3'
miRNA:   3'- aGCGGCa-------UGcGGCGGC----GGCUGGGGcu -5'
23302 3' -64 NC_005259.1 + 43024 0.66 0.360913
Target:  5'- cCGgCG-AUGCCGCCGagcaGGCCgCCGAg -3'
miRNA:   3'- aGCgGCaUGCGGCGGCgg--CUGG-GGCU- -5'
23302 3' -64 NC_005259.1 + 18488 0.66 0.360913
Target:  5'- aCGCCG-ACGagcuaCGCCGaCGACCUCa- -3'
miRNA:   3'- aGCGGCaUGCg----GCGGCgGCUGGGGcu -5'
23302 3' -64 NC_005259.1 + 17307 0.67 0.353108
Target:  5'- aCcCUGUACGCCGa-GCgGuACCCCGAg -3'
miRNA:   3'- aGcGGCAUGCGGCggCGgC-UGGGGCU- -5'
23302 3' -64 NC_005259.1 + 56311 0.67 0.353108
Target:  5'- -gGCCGgacccuCGUCGCCGUCGAgcaaUCCGAc -3'
miRNA:   3'- agCGGCau----GCGGCGGCGGCUg---GGGCU- -5'
23302 3' -64 NC_005259.1 + 5440 0.67 0.353108
Target:  5'- gCGCC---CGCUGCCGCCGACagaUCGc -3'
miRNA:   3'- aGCGGcauGCGGCGGCGGCUGg--GGCu -5'
23302 3' -64 NC_005259.1 + 48618 0.67 0.345425
Target:  5'- cCGCCGUGCGCa-CUGCCu-CgCCGAg -3'
miRNA:   3'- aGCGGCAUGCGgcGGCGGcuGgGGCU- -5'
23302 3' -64 NC_005259.1 + 32982 0.67 0.345425
Target:  5'- gUGCCG-AUGCCgaggguGCCGCC-ACgCCCGAu -3'
miRNA:   3'- aGCGGCaUGCGG------CGGCGGcUG-GGGCU- -5'
23302 3' -64 NC_005259.1 + 54735 0.67 0.345425
Target:  5'- -aGCCGagGCuGCCgacagcgaucagGCCGCCGACCCa-- -3'
miRNA:   3'- agCGGCa-UG-CGG------------CGGCGGCUGGGgcu -5'
23302 3' -64 NC_005259.1 + 53634 0.67 0.343143
Target:  5'- gUGCCGUugGCCGCUuccuGCaCGuuguacgggccgagGCCCCa- -3'
miRNA:   3'- aGCGGCAugCGGCGG----CG-GC--------------UGGGGcu -5'
23302 3' -64 NC_005259.1 + 43876 0.67 0.337861
Target:  5'- aCaCCGgcaGCGuuGCCGCCGACauugCCCGc -3'
miRNA:   3'- aGcGGCa--UGCggCGGCGGCUG----GGGCu -5'
23302 3' -64 NC_005259.1 + 56899 0.67 0.337861
Target:  5'- aUCGCagCGUG-GCCGCCGCagcaggCGugCCCGc -3'
miRNA:   3'- -AGCG--GCAUgCGGCGGCG------GCugGGGCu -5'
23302 3' -64 NC_005259.1 + 37651 0.67 0.337861
Target:  5'- cCGCaccgcCGCCGCCGCCGguGCCgCCa- -3'
miRNA:   3'- aGCGgcau-GCGGCGGCGGC--UGG-GGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.