miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23302 3' -64 NC_005259.1 + 26489 0.66 0.376877
Target:  5'- gUCGCgGaACGCCGCgagcuCGCCG-CCCggCGAg -3'
miRNA:   3'- -AGCGgCaUGCGGCG-----GCGGCuGGG--GCU- -5'
23302 3' -64 NC_005259.1 + 61966 0.66 0.376877
Target:  5'- -aGCCucacGCGCCGCUGCCucGACCuuGc -3'
miRNA:   3'- agCGGca--UGCGGCGGCGG--CUGGggCu -5'
23302 3' -64 NC_005259.1 + 19361 0.66 0.360913
Target:  5'- aCGCCGggaucaagGCcCCGCUGaucaCCGGCCCCa- -3'
miRNA:   3'- aGCGGCa-------UGcGGCGGC----GGCUGGGGcu -5'
23302 3' -64 NC_005259.1 + 43950 0.66 0.385036
Target:  5'- gCGUCGgcgaugggcgGgGCCGCCGCCuGACCgagggcggugCCGAu -3'
miRNA:   3'- aGCGGCa---------UgCGGCGGCGG-CUGG----------GGCU- -5'
23302 3' -64 NC_005259.1 + 8820 0.66 0.3617
Target:  5'- gCGCCGggccggugaguugacGCGCUG-CGCCGACCaCCa- -3'
miRNA:   3'- aGCGGCa--------------UGCGGCgGCGGCUGG-GGcu -5'
23302 3' -64 NC_005259.1 + 35508 0.66 0.385036
Target:  5'- gCcCCGUugcCGCCGCCGCCgGGCacaCCGc -3'
miRNA:   3'- aGcGGCAu--GCGGCGGCGG-CUGg--GGCu -5'
23302 3' -64 NC_005259.1 + 60536 0.66 0.401701
Target:  5'- -gGCCGggacGCaGCCGCuCGUCGGCaugCCCGGu -3'
miRNA:   3'- agCGGCa---UG-CGGCG-GCGGCUG---GGGCU- -5'
23302 3' -64 NC_005259.1 + 48131 0.66 0.385036
Target:  5'- cCGCCu--CGaCCaCCGCCG-CCCCGGc -3'
miRNA:   3'- aGCGGcauGC-GGcGGCGGCuGGGGCU- -5'
23302 3' -64 NC_005259.1 + 42631 0.66 0.393312
Target:  5'- gUCGCgCGUAgGCa-CC-UCGGCCCCGAu -3'
miRNA:   3'- -AGCG-GCAUgCGgcGGcGGCUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 15276 0.66 0.389988
Target:  5'- gUCGCCG-ACGagcaagcgaucuaCaCCGCCGACCUCGc -3'
miRNA:   3'- -AGCGGCaUGCg------------GcGGCGGCUGGGGCu -5'
23302 3' -64 NC_005259.1 + 53634 0.67 0.343143
Target:  5'- gUGCCGUugGCCGCUuccuGCaCGuuguacgggccgagGCCCCa- -3'
miRNA:   3'- aGCGGCAugCGGCGG----CG-GC--------------UGGGGcu -5'
23302 3' -64 NC_005259.1 + 40619 0.67 0.320927
Target:  5'- cUGCCGUcgcgcacgaacucgAUGCCGUCGCCGAgaaagucaugcuCgCCGAg -3'
miRNA:   3'- aGCGGCA--------------UGCGGCGGCGGCU------------GgGGCU- -5'
23302 3' -64 NC_005259.1 + 52042 0.67 0.308823
Target:  5'- gCGCUGU-CGCCGUcgaggaucgcgaCGCCGuCCuCCGAc -3'
miRNA:   3'- aGCGGCAuGCGGCG------------GCGGCuGG-GGCU- -5'
23302 3' -64 NC_005259.1 + 42809 0.67 0.306724
Target:  5'- -gGCgCGUGCacugugguauugcuGCCGCCGCCGAaaCCGc -3'
miRNA:   3'- agCG-GCAUG--------------CGGCGGCGGCUggGGCu -5'
23302 3' -64 NC_005259.1 + 56311 0.67 0.353108
Target:  5'- -gGCCGgacccuCGUCGCCGUCGAgcaaUCCGAc -3'
miRNA:   3'- agCGGCau----GCGGCGGCGGCUg---GGGCU- -5'
23302 3' -64 NC_005259.1 + 17307 0.67 0.353108
Target:  5'- aCcCUGUACGCCGa-GCgGuACCCCGAg -3'
miRNA:   3'- aGcGGCAUGCGGCggCGgC-UGGGGCU- -5'
23302 3' -64 NC_005259.1 + 48618 0.67 0.345425
Target:  5'- cCGCCGUGCGCa-CUGCCu-CgCCGAg -3'
miRNA:   3'- aGCGGCAUGCGgcGGCGGcuGgGGCU- -5'
23302 3' -64 NC_005259.1 + 32982 0.67 0.345425
Target:  5'- gUGCCG-AUGCCgaggguGCCGCC-ACgCCCGAu -3'
miRNA:   3'- aGCGGCaUGCGG------CGGCGGcUG-GGGCU- -5'
23302 3' -64 NC_005259.1 + 54735 0.67 0.345425
Target:  5'- -aGCCGagGCuGCCgacagcgaucagGCCGCCGACCCa-- -3'
miRNA:   3'- agCGGCa-UG-CGG------------CGGCGGCUGGGgcu -5'
23302 3' -64 NC_005259.1 + 11445 0.67 0.323099
Target:  5'- -gGCCGcuCGCUGCCGCCgGugCCUa- -3'
miRNA:   3'- agCGGCauGCGGCGGCGG-CugGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.