miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23302 3' -64 NC_005259.1 + 13563 0.73 0.125064
Target:  5'- cCGCCG-ACcCCGCC-CCGACaCCCGAg -3'
miRNA:   3'- aGCGGCaUGcGGCGGcGGCUG-GGGCU- -5'
23302 3' -64 NC_005259.1 + 19706 0.73 0.125064
Target:  5'- cUCGCaCGUugGCUGCCGCCGAggugaUCGAc -3'
miRNA:   3'- -AGCG-GCAugCGGCGGCGGCUgg---GGCU- -5'
23302 3' -64 NC_005259.1 + 11827 0.73 0.128315
Target:  5'- cUGUCGUACuGCCaCCGCCGcACUCCGAc -3'
miRNA:   3'- aGCGGCAUG-CGGcGGCGGC-UGGGGCU- -5'
23302 3' -64 NC_005259.1 + 45314 0.73 0.131644
Target:  5'- aCGCCG-AgGCCGCCGCCGaACUgCGu -3'
miRNA:   3'- aGCGGCaUgCGGCGGCGGC-UGGgGCu -5'
23302 3' -64 NC_005259.1 + 46237 0.73 0.138542
Target:  5'- -aGCuCGgcUGCCGCCugaggcacGUCGACCCCGAg -3'
miRNA:   3'- agCG-GCauGCGGCGG--------CGGCUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 6520 0.73 0.138542
Target:  5'- aCGCCGUGCGCgCGaCaaCCGGCCUCGGg -3'
miRNA:   3'- aGCGGCAUGCG-GC-GgcGGCUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 53249 0.72 0.142115
Target:  5'- cCGCCGacaccguCGCCGCCGCUGuCgCCGGu -3'
miRNA:   3'- aGCGGCau-----GCGGCGGCGGCuGgGGCU- -5'
23302 3' -64 NC_005259.1 + 45404 0.72 0.149513
Target:  5'- cCGCCGaGCgcgcugaugGCCGCCGCCGcuGCCUCGu -3'
miRNA:   3'- aGCGGCaUG---------CGGCGGCGGC--UGGGGCu -5'
23302 3' -64 NC_005259.1 + 68736 0.72 0.153343
Target:  5'- gUCGCCGcuUGCCGa-GCuCGACCCCGGc -3'
miRNA:   3'- -AGCGGCauGCGGCggCG-GCUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 48386 0.72 0.15726
Target:  5'- cUGuuGU-CGuuGCCGCCGACgCCCGc -3'
miRNA:   3'- aGCggCAuGCggCGGCGGCUG-GGGCu -5'
23302 3' -64 NC_005259.1 + 56227 0.72 0.161269
Target:  5'- aUGCCaGU-CGUCGCCGCCGACCaCGu -3'
miRNA:   3'- aGCGG-CAuGCGGCGGCGGCUGGgGCu -5'
23302 3' -64 NC_005259.1 + 56257 0.72 0.161269
Target:  5'- aUCGgCGgccuugaGCGCCGCCGCCcGGCCCg-- -3'
miRNA:   3'- -AGCgGCa------UGCGGCGGCGG-CUGGGgcu -5'
23302 3' -64 NC_005259.1 + 21075 0.72 0.161269
Target:  5'- aCG-CGUAUGCCGCUGUCGACgCUGGc -3'
miRNA:   3'- aGCgGCAUGCGGCGGCGGCUGgGGCU- -5'
23302 3' -64 NC_005259.1 + 7643 0.71 0.169562
Target:  5'- gUCGCCGaguuCGaCCGCCGUCGucgugagcGCCCCGc -3'
miRNA:   3'- -AGCGGCau--GC-GGCGGCGGC--------UGGGGCu -5'
23302 3' -64 NC_005259.1 + 275 0.71 0.173417
Target:  5'- gCGgUGUACGCCGCCuacgcggccucgcGCUGAUCUCGAc -3'
miRNA:   3'- aGCgGCAUGCGGCGG-------------CGGCUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 12276 0.71 0.173417
Target:  5'- gCGUCGUggaucucACGCCGCCGC--GCCUCGAu -3'
miRNA:   3'- aGCGGCA-------UGCGGCGGCGgcUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 36661 0.71 0.173851
Target:  5'- cCGCCGcccucgcCGCCGCCGCCGGggUCuuGAc -3'
miRNA:   3'- aGCGGCau-----GCGGCGGCGGCU--GGggCU- -5'
23302 3' -64 NC_005259.1 + 56366 0.71 0.178235
Target:  5'- aCGCgGUACaGCCGUCGCgGGCCgCGu -3'
miRNA:   3'- aGCGgCAUG-CGGCGGCGgCUGGgGCu -5'
23302 3' -64 NC_005259.1 + 37156 0.71 0.1873
Target:  5'- -aGCCGUcacCGCCGCgccCGCCGACgCCGc -3'
miRNA:   3'- agCGGCAu--GCGGCG---GCGGCUGgGGCu -5'
23302 3' -64 NC_005259.1 + 26406 0.71 0.1873
Target:  5'- aCGCCGggcgcgGCGgUGCCGCCGuagaacgcACCgCCGAg -3'
miRNA:   3'- aGCGGCa-----UGCgGCGGCGGC--------UGG-GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.