miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23302 3' -64 NC_005259.1 + 18562 1.08 0.000276
Target:  5'- aUCGCCGUACGCCGCCGCCGACCCCGAg -3'
miRNA:   3'- -AGCGGCAUGCGGCGGCGGCUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 25181 0.87 0.011508
Target:  5'- aC-CCGUACGCCGCCGCCGAUCCCa- -3'
miRNA:   3'- aGcGGCAUGCGGCGGCGGCUGGGGcu -5'
23302 3' -64 NC_005259.1 + 26050 0.81 0.031494
Target:  5'- cCGCCGgguuggccAUGCCGCCGCCGAgcagucCCCCGAg -3'
miRNA:   3'- aGCGGCa-------UGCGGCGGCGGCU------GGGGCU- -5'
23302 3' -64 NC_005259.1 + 39894 0.8 0.041247
Target:  5'- aUCGuuGU-CGCCGCCGCCcGCCUCGAu -3'
miRNA:   3'- -AGCggCAuGCGGCGGCGGcUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 35544 0.79 0.04846
Target:  5'- gUCGCCGaucCGCCcgaugacuuGCCGCCGACCgCCGAg -3'
miRNA:   3'- -AGCGGCau-GCGG---------CGGCGGCUGG-GGCU- -5'
23302 3' -64 NC_005259.1 + 23653 0.78 0.055397
Target:  5'- cCGCCG-ACGgCGacggcuggaCCGCCGACCCCGAg -3'
miRNA:   3'- aGCGGCaUGCgGC---------GGCGGCUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 13009 0.78 0.056896
Target:  5'- cUCGgC-UACGCCGCCGcCCGGCCCCa- -3'
miRNA:   3'- -AGCgGcAUGCGGCGGC-GGCUGGGGcu -5'
23302 3' -64 NC_005259.1 + 26130 0.77 0.061632
Target:  5'- gUCGCCGguccgACGCCGCCgagGCCGAgcagCCCGAa -3'
miRNA:   3'- -AGCGGCa----UGCGGCGG---CGGCUg---GGGCU- -5'
23302 3' -64 NC_005259.1 + 55871 0.77 0.063294
Target:  5'- cUCGCCGaGCGCCucGCC-CCGACCUCGGg -3'
miRNA:   3'- -AGCGGCaUGCGG--CGGcGGCUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 42200 0.77 0.073042
Target:  5'- gCGCCGU-CGCgauggaugcccgccgCGCCGCCGuCCCCGGc -3'
miRNA:   3'- aGCGGCAuGCG---------------GCGGCGGCuGGGGCU- -5'
23302 3' -64 NC_005259.1 + 7569 0.76 0.07421
Target:  5'- aCGCCaccGUucgcgcCGCCGCCGCCGACCUCa- -3'
miRNA:   3'- aGCGG---CAu-----GCGGCGGCGGCUGGGGcu -5'
23302 3' -64 NC_005259.1 + 22667 0.76 0.078235
Target:  5'- aUCGCCG-ACGCacugacCGCCGCCGAuuuCCCCGc -3'
miRNA:   3'- -AGCGGCaUGCG------GCGGCGGCU---GGGGCu -5'
23302 3' -64 NC_005259.1 + 14319 0.75 0.089231
Target:  5'- cCGCCcucgACGCCGCCGCCcgcgugcgGGCCgCCGAc -3'
miRNA:   3'- aGCGGca--UGCGGCGGCGG--------CUGG-GGCU- -5'
23302 3' -64 NC_005259.1 + 63170 0.74 0.109926
Target:  5'- cCGCCGcaGCGCCGCCGaggugaUCGcACCCCGGu -3'
miRNA:   3'- aGCGGCa-UGCGGCGGC------GGC-UGGGGCU- -5'
23302 3' -64 NC_005259.1 + 25088 0.74 0.111071
Target:  5'- cCGCCGcUGCGcCCGCCccgagcaagggcaagGUCGACCCCGc -3'
miRNA:   3'- aGCGGC-AUGC-GGCGG---------------CGGCUGGGGCu -5'
23302 3' -64 NC_005259.1 + 65804 0.74 0.112809
Target:  5'- gCGCUGgucgaaACGCUgGCCGUCGACCUCGAa -3'
miRNA:   3'- aGCGGCa-----UGCGG-CGGCGGCUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 58864 0.73 0.121889
Target:  5'- cUCGCCGU-CGUCGUCGUCG-CCUCGGc -3'
miRNA:   3'- -AGCGGCAuGCGGCGGCGGCuGGGGCU- -5'
23302 3' -64 NC_005259.1 + 51491 0.73 0.121889
Target:  5'- cCGCCGgggauagguCGaCGCCGCCGAUCUCGAc -3'
miRNA:   3'- aGCGGCau-------GCgGCGGCGGCUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 22605 0.73 0.121889
Target:  5'- -aGCUGcACGCCGCCGaCCGcCgCCCGAu -3'
miRNA:   3'- agCGGCaUGCGGCGGC-GGCuG-GGGCU- -5'
23302 3' -64 NC_005259.1 + 13563 0.73 0.125064
Target:  5'- cCGCCG-ACcCCGCC-CCGACaCCCGAg -3'
miRNA:   3'- aGCGGCaUGcGGCGGcGGCUG-GGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.