Results 1 - 20 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23302 | 3' | -64 | NC_005259.1 | + | 2742 | 0.66 | 0.401701 |
Target: 5'- aUGCCG-AgGUCGCCGUCGugCaguaCGAc -3' miRNA: 3'- aGCGGCaUgCGGCGGCGGCugGg---GCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 14319 | 0.75 | 0.089231 |
Target: 5'- cCGCCcucgACGCCGCCGCCcgcgugcgGGCCgCCGAc -3' miRNA: 3'- aGCGGca--UGCGGCGGCGG--------CUGG-GGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 63170 | 0.74 | 0.109926 |
Target: 5'- cCGCCGcaGCGCCGCCGaggugaUCGcACCCCGGu -3' miRNA: 3'- aGCGGCa-UGCGGCGGC------GGC-UGGGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 25088 | 0.74 | 0.111071 |
Target: 5'- cCGCCGcUGCGcCCGCCccgagcaagggcaagGUCGACCCCGc -3' miRNA: 3'- aGCGGC-AUGC-GGCGG---------------CGGCUGGGGCu -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 65804 | 0.74 | 0.112809 |
Target: 5'- gCGCUGgucgaaACGCUgGCCGUCGACCUCGAa -3' miRNA: 3'- aGCGGCa-----UGCGG-CGGCGGCUGGGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 22605 | 0.73 | 0.121889 |
Target: 5'- -aGCUGcACGCCGCCGaCCGcCgCCCGAu -3' miRNA: 3'- agCGGCaUGCGGCGGC-GGCuG-GGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 51491 | 0.73 | 0.121889 |
Target: 5'- cCGCCGgggauagguCGaCGCCGCCGAUCUCGAc -3' miRNA: 3'- aGCGGCau-------GCgGCGGCGGCUGGGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 58864 | 0.73 | 0.121889 |
Target: 5'- cUCGCCGU-CGUCGUCGUCG-CCUCGGc -3' miRNA: 3'- -AGCGGCAuGCGGCGGCGGCuGGGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 19706 | 0.73 | 0.125064 |
Target: 5'- cUCGCaCGUugGCUGCCGCCGAggugaUCGAc -3' miRNA: 3'- -AGCG-GCAugCGGCGGCGGCUgg---GGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 22667 | 0.76 | 0.078235 |
Target: 5'- aUCGCCG-ACGCacugacCGCCGCCGAuuuCCCCGc -3' miRNA: 3'- -AGCGGCaUGCG------GCGGCGGCU---GGGGCu -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 7569 | 0.76 | 0.07421 |
Target: 5'- aCGCCaccGUucgcgcCGCCGCCGCCGACCUCa- -3' miRNA: 3'- aGCGG---CAu-----GCGGCGGCGGCUGGGGcu -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 42200 | 0.77 | 0.073042 |
Target: 5'- gCGCCGU-CGCgauggaugcccgccgCGCCGCCGuCCCCGGc -3' miRNA: 3'- aGCGGCAuGCG---------------GCGGCGGCuGGGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 25181 | 0.87 | 0.011508 |
Target: 5'- aC-CCGUACGCCGCCGCCGAUCCCa- -3' miRNA: 3'- aGcGGCAUGCGGCGGCGGCUGGGGcu -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 26050 | 0.81 | 0.031494 |
Target: 5'- cCGCCGgguuggccAUGCCGCCGCCGAgcagucCCCCGAg -3' miRNA: 3'- aGCGGCa-------UGCGGCGGCGGCU------GGGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 39894 | 0.8 | 0.041247 |
Target: 5'- aUCGuuGU-CGCCGCCGCCcGCCUCGAu -3' miRNA: 3'- -AGCggCAuGCGGCGGCGGcUGGGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 35544 | 0.79 | 0.04846 |
Target: 5'- gUCGCCGaucCGCCcgaugacuuGCCGCCGACCgCCGAg -3' miRNA: 3'- -AGCGGCau-GCGG---------CGGCGGCUGG-GGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 23653 | 0.78 | 0.055397 |
Target: 5'- cCGCCG-ACGgCGacggcuggaCCGCCGACCCCGAg -3' miRNA: 3'- aGCGGCaUGCgGC---------GGCGGCUGGGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 13009 | 0.78 | 0.056896 |
Target: 5'- cUCGgC-UACGCCGCCGcCCGGCCCCa- -3' miRNA: 3'- -AGCgGcAUGCGGCGGC-GGCUGGGGcu -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 26130 | 0.77 | 0.061632 |
Target: 5'- gUCGCCGguccgACGCCGCCgagGCCGAgcagCCCGAa -3' miRNA: 3'- -AGCGGCa----UGCGGCGG---CGGCUg---GGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 55871 | 0.77 | 0.063294 |
Target: 5'- cUCGCCGaGCGCCucGCC-CCGACCUCGGg -3' miRNA: 3'- -AGCGGCaUGCGG--CGGcGGCUGGGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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