miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23302 3' -64 NC_005259.1 + 275 0.71 0.173417
Target:  5'- gCGgUGUACGCCGCCuacgcggccucgcGCUGAUCUCGAc -3'
miRNA:   3'- aGCgGCAUGCGGCGG-------------CGGCUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 1371 0.68 0.295033
Target:  5'- cUCGCC--GCGCCGcCCGCgaGGCCCgCGc -3'
miRNA:   3'- -AGCGGcaUGCGGC-GGCGg-CUGGG-GCu -5'
23302 3' -64 NC_005259.1 + 1828 0.71 0.191983
Target:  5'- cCGCCGaccugcucgcCGCUGCCGCCGAggCCGAg -3'
miRNA:   3'- aGCGGCau--------GCGGCGGCGGCUggGGCU- -5'
23302 3' -64 NC_005259.1 + 2742 0.66 0.401701
Target:  5'- aUGCCG-AgGUCGCCGUCGugCaguaCGAc -3'
miRNA:   3'- aGCGGCaUgCGGCGGCGGCugGg---GCU- -5'
23302 3' -64 NC_005259.1 + 2989 0.67 0.33042
Target:  5'- gCGuCCGcaacAUGCgCGCCGCCGACgCCa- -3'
miRNA:   3'- aGC-GGCa---UGCG-GCGGCGGCUGgGGcu -5'
23302 3' -64 NC_005259.1 + 3282 0.68 0.28832
Target:  5'- uUC-CCGU-CGCCGCCucGCCGGuCCCuCGGc -3'
miRNA:   3'- -AGcGGCAuGCGGCGG--CGGCU-GGG-GCU- -5'
23302 3' -64 NC_005259.1 + 3502 0.69 0.238903
Target:  5'- aCGCgaccaUGUGCGCCGCCGCguucaacgggcaCGACaCCGAc -3'
miRNA:   3'- aGCG-----GCAUGCGGCGGCG------------GCUGgGGCU- -5'
23302 3' -64 NC_005259.1 + 3901 0.68 0.301868
Target:  5'- aUCGUCGccAUGCUGCCGUaccUGAaCCCCGGc -3'
miRNA:   3'- -AGCGGCa-UGCGGCGGCG---GCU-GGGGCU- -5'
23302 3' -64 NC_005259.1 + 4510 0.69 0.23325
Target:  5'- gCGCCGggagugGCGCUG-CGCgGcACCCCGGu -3'
miRNA:   3'- aGCGGCa-----UGCGGCgGCGgC-UGGGGCU- -5'
23302 3' -64 NC_005259.1 + 5188 0.67 0.333382
Target:  5'- cUCuCCG-ACGCCGCCGCCaagcucaccGcgcucgccgagcaauACCCCGAc -3'
miRNA:   3'- -AGcGGCaUGCGGCGGCGG---------C---------------UGGGGCU- -5'
23302 3' -64 NC_005259.1 + 5440 0.67 0.353108
Target:  5'- gCGCC---CGCUGCCGCCGACagaUCGc -3'
miRNA:   3'- aGCGGcauGCGGCGGCGGCUGg--GGCu -5'
23302 3' -64 NC_005259.1 + 6354 0.68 0.301868
Target:  5'- gUGCCGUACGUgcgcacguUGUCGCCGGgCgCGAu -3'
miRNA:   3'- aGCGGCAUGCG--------GCGGCGGCUgGgGCU- -5'
23302 3' -64 NC_005259.1 + 6520 0.73 0.138542
Target:  5'- aCGCCGUGCGCgCGaCaaCCGGCCUCGGg -3'
miRNA:   3'- aGCGGCAUGCG-GC-GgcGGCUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 6914 0.68 0.281728
Target:  5'- cCGCCGccauCGagaaCCGCCGCCG-CCuuGAg -3'
miRNA:   3'- aGCGGCau--GC----GGCGGCGGCuGGggCU- -5'
23302 3' -64 NC_005259.1 + 6945 0.66 0.368836
Target:  5'- -gGCCGa--GCuCGCCGCCGAcggcauccacacCCUCGAu -3'
miRNA:   3'- agCGGCaugCG-GCGGCGGCU------------GGGGCU- -5'
23302 3' -64 NC_005259.1 + 7326 0.66 0.360913
Target:  5'- cCGCCGU-CGCCGaguaCGUCGAggCCGGa -3'
miRNA:   3'- aGCGGCAuGCGGCg---GCGGCUggGGCU- -5'
23302 3' -64 NC_005259.1 + 7421 0.66 0.401701
Target:  5'- gUCGCCGUcggcggugcccGCGCCGCaugGCa-GCgCCGAg -3'
miRNA:   3'- -AGCGGCA-----------UGCGGCGg--CGgcUGgGGCU- -5'
23302 3' -64 NC_005259.1 + 7569 0.76 0.07421
Target:  5'- aCGCCaccGUucgcgcCGCCGCCGCCGACCUCa- -3'
miRNA:   3'- aGCGG---CAu-----GCGGCGGCGGCUGGGGcu -5'
23302 3' -64 NC_005259.1 + 7643 0.71 0.169562
Target:  5'- gUCGCCGaguuCGaCCGCCGUCGucgugagcGCCCCGc -3'
miRNA:   3'- -AGCGGCau--GC-GGCGGCGGC--------UGGGGCu -5'
23302 3' -64 NC_005259.1 + 8057 0.7 0.22228
Target:  5'- cCGCCG---GUCGCCGCCGACaUCGAg -3'
miRNA:   3'- aGCGGCaugCGGCGGCGGCUGgGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.