miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23302 3' -64 NC_005259.1 + 68736 0.72 0.153343
Target:  5'- gUCGCCGcuUGCCGa-GCuCGACCCCGGc -3'
miRNA:   3'- -AGCGGCauGCGGCggCG-GCUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 67749 0.67 0.33042
Target:  5'- -gGCCacUAgGCCGCC-CCGGCCaCCGGc -3'
miRNA:   3'- agCGGc-AUgCGGCGGcGGCUGG-GGCU- -5'
23302 3' -64 NC_005259.1 + 66047 0.68 0.301868
Target:  5'- cUCGaCGUagACGCCGCCGUgGGCCUg-- -3'
miRNA:   3'- -AGCgGCA--UGCGGCGGCGgCUGGGgcu -5'
23302 3' -64 NC_005259.1 + 65804 0.74 0.112809
Target:  5'- gCGCUGgucgaaACGCUgGCCGUCGACCUCGAa -3'
miRNA:   3'- aGCGGCa-----UGCGG-CGGCGGCUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 64685 0.66 0.385036
Target:  5'- cCGCC--GCGCCGCCGagCGAUaCCCa- -3'
miRNA:   3'- aGCGGcaUGCGGCGGCg-GCUG-GGGcu -5'
23302 3' -64 NC_005259.1 + 63170 0.74 0.109926
Target:  5'- cCGCCGcaGCGCCGCCGaggugaUCGcACCCCGGu -3'
miRNA:   3'- aGCGGCa-UGCGGCGGC------GGC-UGGGGCU- -5'
23302 3' -64 NC_005259.1 + 61966 0.66 0.376877
Target:  5'- -aGCCucacGCGCCGCUGCCucGACCuuGc -3'
miRNA:   3'- agCGGca--UGCGGCGGCGG--CUGGggCu -5'
23302 3' -64 NC_005259.1 + 60536 0.66 0.401701
Target:  5'- -gGCCGggacGCaGCCGCuCGUCGGCaugCCCGGu -3'
miRNA:   3'- agCGGCa---UG-CGGCG-GCGGCUG---GGGCU- -5'
23302 3' -64 NC_005259.1 + 60147 0.69 0.250553
Target:  5'- -gGCC-UugGCCGCCGCCucagcGGCCUCa- -3'
miRNA:   3'- agCGGcAugCGGCGGCGG-----CUGGGGcu -5'
23302 3' -64 NC_005259.1 + 58864 0.73 0.121889
Target:  5'- cUCGCCGU-CGUCGUCGUCG-CCUCGGc -3'
miRNA:   3'- -AGCGGCAuGCGGCGGCGGCuGGGGCU- -5'
23302 3' -64 NC_005259.1 + 58700 0.69 0.238903
Target:  5'- -gGCuCGU-CGCCGCCGCCGucACCaucgCCGGg -3'
miRNA:   3'- agCG-GCAuGCGGCGGCGGC--UGG----GGCU- -5'
23302 3' -64 NC_005259.1 + 58574 0.69 0.23325
Target:  5'- -gGCCGgaucgcgGCGCgGCUGCCGGgCCgGAu -3'
miRNA:   3'- agCGGCa------UGCGgCGGCGGCUgGGgCU- -5'
23302 3' -64 NC_005259.1 + 57165 0.69 0.23325
Target:  5'- gUGCCGaacgcguccuCGCCGCCGUaguuCGGCCCgCGAa -3'
miRNA:   3'- aGCGGCau--------GCGGCGGCG----GCUGGG-GCU- -5'
23302 3' -64 NC_005259.1 + 56899 0.67 0.337861
Target:  5'- aUCGCagCGUG-GCCGCCGCagcaggCGugCCCGc -3'
miRNA:   3'- -AGCG--GCAUgCGGCGGCG------GCugGGGCu -5'
23302 3' -64 NC_005259.1 + 56366 0.71 0.178235
Target:  5'- aCGCgGUACaGCCGUCGCgGGCCgCGu -3'
miRNA:   3'- aGCGgCAUG-CGGCGGCGgCUGGgGCu -5'
23302 3' -64 NC_005259.1 + 56311 0.67 0.353108
Target:  5'- -gGCCGgacccuCGUCGCCGUCGAgcaaUCCGAc -3'
miRNA:   3'- agCGGCau----GCGGCGGCGGCUg---GGGCU- -5'
23302 3' -64 NC_005259.1 + 56257 0.72 0.161269
Target:  5'- aUCGgCGgccuugaGCGCCGCCGCCcGGCCCg-- -3'
miRNA:   3'- -AGCgGCa------UGCGGCGGCGG-CUGGGgcu -5'
23302 3' -64 NC_005259.1 + 56227 0.72 0.161269
Target:  5'- aUGCCaGU-CGUCGCCGCCGACCaCGu -3'
miRNA:   3'- aGCGG-CAuGCGGCGGCGGCUGGgGCu -5'
23302 3' -64 NC_005259.1 + 55871 0.77 0.063294
Target:  5'- cUCGCCGaGCGCCucGCC-CCGACCUCGGg -3'
miRNA:   3'- -AGCGGCaUGCGG--CGGcGGCUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 54735 0.67 0.345425
Target:  5'- -aGCCGagGCuGCCgacagcgaucagGCCGCCGACCCa-- -3'
miRNA:   3'- agCGGCa-UG-CGG------------CGGCGGCUGGGgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.