Results 1 - 20 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23302 | 3' | -64 | NC_005259.1 | + | 26087 | 0.66 | 0.385036 |
Target: 5'- ------nAgGCCGCCGCCGAgaagacCCCCGAg -3' miRNA: 3'- agcggcaUgCGGCGGCGGCU------GGGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 2742 | 0.66 | 0.401701 |
Target: 5'- aUGCCG-AgGUCGCCGUCGugCaguaCGAc -3' miRNA: 3'- aGCGGCaUgCGGCGGCGGCugGg---GCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 8343 | 0.66 | 0.393312 |
Target: 5'- -aGCCGgucACGCUGCUGCCGGuauCgCUCGGc -3' miRNA: 3'- agCGGCa--UGCGGCGGCGGCU---G-GGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 8820 | 0.66 | 0.3617 |
Target: 5'- gCGCCGggccggugaguugacGCGCUG-CGCCGACCaCCa- -3' miRNA: 3'- aGCGGCa--------------UGCGGCgGCGGCUGG-GGcu -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 61966 | 0.66 | 0.376877 |
Target: 5'- -aGCCucacGCGCCGCUGCCucGACCuuGc -3' miRNA: 3'- agCGGca--UGCGGCGGCGG--CUGGggCu -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 24825 | 0.66 | 0.385036 |
Target: 5'- aCGCCGUGC-CCGCa-CCGACCaaGc -3' miRNA: 3'- aGCGGCAUGcGGCGgcGGCUGGggCu -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 15276 | 0.66 | 0.389988 |
Target: 5'- gUCGCCG-ACGagcaagcgaucuaCaCCGCCGACCUCGc -3' miRNA: 3'- -AGCGGCaUGCg------------GcGGCGGCUGGGGCu -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 26489 | 0.66 | 0.376877 |
Target: 5'- gUCGCgGaACGCCGCgagcuCGCCG-CCCggCGAg -3' miRNA: 3'- -AGCGgCaUGCGGCG-----GCGGCuGGG--GCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 17337 | 0.66 | 0.376877 |
Target: 5'- gUGCCGgucaACGUCGCCGUCGAggUCGGc -3' miRNA: 3'- aGCGGCa---UGCGGCGGCGGCUggGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 19361 | 0.66 | 0.360913 |
Target: 5'- aCGCCGggaucaagGCcCCGCUGaucaCCGGCCCCa- -3' miRNA: 3'- aGCGGCa-------UGcGGCGGC----GGCUGGGGcu -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 48131 | 0.66 | 0.385036 |
Target: 5'- cCGCCu--CGaCCaCCGCCG-CCCCGGc -3' miRNA: 3'- aGCGGcauGC-GGcGGCGGCuGGGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 35508 | 0.66 | 0.385036 |
Target: 5'- gCcCCGUugcCGCCGCCGCCgGGCacaCCGc -3' miRNA: 3'- aGcGGCAu--GCGGCGGCGG-CUGg--GGCu -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 42631 | 0.66 | 0.393312 |
Target: 5'- gUCGCgCGUAgGCa-CC-UCGGCCCCGAu -3' miRNA: 3'- -AGCG-GCAUgCGgcGGcGGCUGGGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 7326 | 0.66 | 0.360913 |
Target: 5'- cCGCCGU-CGCCGaguaCGUCGAggCCGGa -3' miRNA: 3'- aGCGGCAuGCGGCg---GCGGCUggGGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 43024 | 0.66 | 0.360913 |
Target: 5'- cCGgCG-AUGCCGCCGagcaGGCCgCCGAg -3' miRNA: 3'- aGCgGCaUGCGGCGGCgg--CUGG-GGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 47375 | 0.66 | 0.376877 |
Target: 5'- gUUGCCGaACGCaCGCgCGCCguugaGACCCuCGu -3' miRNA: 3'- -AGCGGCaUGCG-GCG-GCGG-----CUGGG-GCu -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 18488 | 0.66 | 0.360913 |
Target: 5'- aCGCCG-ACGagcuaCGCCGaCGACCUCa- -3' miRNA: 3'- aGCGGCaUGCg----GCGGCgGCUGGGGcu -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 43950 | 0.66 | 0.385036 |
Target: 5'- gCGUCGgcgaugggcgGgGCCGCCGCCuGACCgagggcggugCCGAu -3' miRNA: 3'- aGCGGCa---------UgCGGCGGCGG-CUGG----------GGCU- -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 64685 | 0.66 | 0.385036 |
Target: 5'- cCGCC--GCGCCGCCGagCGAUaCCCa- -3' miRNA: 3'- aGCGGcaUGCGGCGGCg-GCUG-GGGcu -5' |
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23302 | 3' | -64 | NC_005259.1 | + | 6945 | 0.66 | 0.368836 |
Target: 5'- -gGCCGa--GCuCGCCGCCGAcggcauccacacCCUCGAu -3' miRNA: 3'- agCGGCaugCG-GCGGCGGCU------------GGGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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