miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23302 3' -64 NC_005259.1 + 8343 0.66 0.393312
Target:  5'- -aGCCGgucACGCUGCUGCCGGuauCgCUCGGc -3'
miRNA:   3'- agCGGCa--UGCGGCGGCGGCU---G-GGGCU- -5'
23302 3' -64 NC_005259.1 + 8820 0.66 0.3617
Target:  5'- gCGCCGggccggugaguugacGCGCUG-CGCCGACCaCCa- -3'
miRNA:   3'- aGCGGCa--------------UGCGGCgGCGGCUGG-GGcu -5'
23302 3' -64 NC_005259.1 + 9520 0.67 0.337861
Target:  5'- gCGCgCGU-CGaCCGCCGCCGGgucaCCgGAg -3'
miRNA:   3'- aGCG-GCAuGC-GGCGGCGGCUg---GGgCU- -5'
23302 3' -64 NC_005259.1 + 10063 0.69 0.245254
Target:  5'- aCGCCGguuugcccucgcaggACGCCGaCGaguaGACCCCGAg -3'
miRNA:   3'- aGCGGCa--------------UGCGGCgGCgg--CUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 11445 0.67 0.323099
Target:  5'- -gGCCGcuCGCUGCCGCCgGugCCUa- -3'
miRNA:   3'- agCGGCauGCGGCGGCGG-CugGGGcu -5'
23302 3' -64 NC_005259.1 + 11827 0.73 0.128315
Target:  5'- cUGUCGUACuGCCaCCGCCGcACUCCGAc -3'
miRNA:   3'- aGCGGCAUG-CGGcGGCGGC-UGGGGCU- -5'
23302 3' -64 NC_005259.1 + 12276 0.71 0.173417
Target:  5'- gCGUCGUggaucucACGCCGCCGC--GCCUCGAu -3'
miRNA:   3'- aGCGGCA-------UGCGGCGGCGgcUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 12328 0.66 0.393312
Target:  5'- cCGCCGccagcucACGCa-CCGCCG-CCUCGAa -3'
miRNA:   3'- aGCGGCa------UGCGgcGGCGGCuGGGGCU- -5'
23302 3' -64 NC_005259.1 + 13009 0.78 0.056896
Target:  5'- cUCGgC-UACGCCGCCGcCCGGCCCCa- -3'
miRNA:   3'- -AGCgGcAUGCGGCGGC-GGCUGGGGcu -5'
23302 3' -64 NC_005259.1 + 13563 0.73 0.125064
Target:  5'- cCGCCG-ACcCCGCC-CCGACaCCCGAg -3'
miRNA:   3'- aGCGGCaUGcGGCGGcGGCUG-GGGCU- -5'
23302 3' -64 NC_005259.1 + 13682 0.66 0.401701
Target:  5'- gUGCuCGUGgaccCGUgGCCgGUCGACCCCGc -3'
miRNA:   3'- aGCG-GCAU----GCGgCGG-CGGCUGGGGCu -5'
23302 3' -64 NC_005259.1 + 14319 0.75 0.089231
Target:  5'- cCGCCcucgACGCCGCCGCCcgcgugcgGGCCgCCGAc -3'
miRNA:   3'- aGCGGca--UGCGGCGGCGG--------CUGG-GGCU- -5'
23302 3' -64 NC_005259.1 + 15276 0.66 0.389988
Target:  5'- gUCGCCG-ACGagcaagcgaucuaCaCCGCCGACCUCGc -3'
miRNA:   3'- -AGCGGCaUGCg------------GcGGCGGCUGGGGCu -5'
23302 3' -64 NC_005259.1 + 17307 0.67 0.353108
Target:  5'- aCcCUGUACGCCGa-GCgGuACCCCGAg -3'
miRNA:   3'- aGcGGCAUGCGGCggCGgC-UGGGGCU- -5'
23302 3' -64 NC_005259.1 + 17337 0.66 0.376877
Target:  5'- gUGCCGgucaACGUCGCCGUCGAggUCGGc -3'
miRNA:   3'- aGCGGCa---UGCGGCGGCGGCUggGGCU- -5'
23302 3' -64 NC_005259.1 + 17654 0.7 0.227709
Target:  5'- aCGCUauGUGCucaucCCGCCGUCGacucGCCCCGAg -3'
miRNA:   3'- aGCGG--CAUGc----GGCGGCGGC----UGGGGCU- -5'
23302 3' -64 NC_005259.1 + 18167 0.7 0.227709
Target:  5'- aCGCCGgaucugGCaGUCGagGUCGACCCCGAc -3'
miRNA:   3'- aGCGGCa-----UG-CGGCggCGGCUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 18488 0.66 0.360913
Target:  5'- aCGCCG-ACGagcuaCGCCGaCGACCUCa- -3'
miRNA:   3'- aGCGGCaUGCg----GCGGCgGCUGGGGcu -5'
23302 3' -64 NC_005259.1 + 18562 1.08 0.000276
Target:  5'- aUCGCCGUACGCCGCCGCCGACCCCGAg -3'
miRNA:   3'- -AGCGGCAUGCGGCGGCGGCUGGGGCU- -5'
23302 3' -64 NC_005259.1 + 19361 0.66 0.360913
Target:  5'- aCGCCGggaucaagGCcCCGCUGaucaCCGGCCCCa- -3'
miRNA:   3'- aGCGGCa-------UGcGGCGGC----GGCUGGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.