Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23308 | 5' | -57.4 | NC_005259.1 | + | 49431 | 0.66 | 0.668973 |
Target: 5'- gAAACCGGcgaGCGCCGccuuggUCGGCAgcCGGa- -3' miRNA: 3'- gUUUGGCC---CGUGGC------AGCCGUa-GCCau -5' |
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23308 | 5' | -57.4 | NC_005259.1 | + | 46416 | 0.66 | 0.658291 |
Target: 5'- gAAACCGGGCugugcacCCGUgacgauggUGGCAagcugcugcUCGGUGa -3' miRNA: 3'- gUUUGGCCCGu------GGCA--------GCCGU---------AGCCAU- -5' |
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23308 | 5' | -57.4 | NC_005259.1 | + | 13436 | 0.66 | 0.658291 |
Target: 5'- gGGGCCGcgcuaGGCgugACCGUCGGCG-CGGc- -3' miRNA: 3'- gUUUGGC-----CCG---UGGCAGCCGUaGCCau -5' |
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23308 | 5' | -57.4 | NC_005259.1 | + | 24039 | 0.66 | 0.658291 |
Target: 5'- gGAACCGccGCAacgUCGUCGGCG-CGGUGc -3' miRNA: 3'- gUUUGGCc-CGU---GGCAGCCGUaGCCAU- -5' |
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23308 | 5' | -57.4 | NC_005259.1 | + | 68787 | 0.66 | 0.636868 |
Target: 5'- gCAggUCGuaCGCCGgggCGGUGUCGGUGc -3' miRNA: 3'- -GUuuGGCccGUGGCa--GCCGUAGCCAU- -5' |
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23308 | 5' | -57.4 | NC_005259.1 | + | 3121 | 0.66 | 0.636868 |
Target: 5'- ----gCGcGGCACCGUgGGCAgCGGa- -3' miRNA: 3'- guuugGC-CCGUGGCAgCCGUaGCCau -5' |
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23308 | 5' | -57.4 | NC_005259.1 | + | 47887 | 0.66 | 0.626145 |
Target: 5'- -uGGCCGGGuCAgCGUCGGC-UCGu-- -3' miRNA: 3'- guUUGGCCC-GUgGCAGCCGuAGCcau -5' |
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23308 | 5' | -57.4 | NC_005259.1 | + | 68303 | 0.66 | 0.626145 |
Target: 5'- gGGAUCGGGCG-CGUCcGGCGaCGGg- -3' miRNA: 3'- gUUUGGCCCGUgGCAG-CCGUaGCCau -5' |
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23308 | 5' | -57.4 | NC_005259.1 | + | 6433 | 0.67 | 0.615427 |
Target: 5'- --cGCCGaugucGGCACCGUCGcGCugAUCGGc- -3' miRNA: 3'- guuUGGC-----CCGUGGCAGC-CG--UAGCCau -5' |
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23308 | 5' | -57.4 | NC_005259.1 | + | 4994 | 0.67 | 0.604724 |
Target: 5'- -uGGCCGGGCACUa-CGGCAa-GGUGg -3' miRNA: 3'- guUUGGCCCGUGGcaGCCGUagCCAU- -5' |
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23308 | 5' | -57.4 | NC_005259.1 | + | 50660 | 0.67 | 0.604724 |
Target: 5'- gGGGCCauaGGGCACCa--GcGCGUCGGUGc -3' miRNA: 3'- gUUUGG---CCCGUGGcagC-CGUAGCCAU- -5' |
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23308 | 5' | -57.4 | NC_005259.1 | + | 10927 | 0.67 | 0.587648 |
Target: 5'- aCAAGCUcGGCGaacucggugucgaccUCGUCGGUGUCGGUc -3' miRNA: 3'- -GUUUGGcCCGU---------------GGCAGCCGUAGCCAu -5' |
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23308 | 5' | -57.4 | NC_005259.1 | + | 36139 | 0.67 | 0.583392 |
Target: 5'- --cGCCGGGCuguCCGUCGcCAUggccaCGGUGa -3' miRNA: 3'- guuUGGCCCGu--GGCAGCcGUA-----GCCAU- -5' |
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23308 | 5' | -57.4 | NC_005259.1 | + | 53917 | 0.67 | 0.562213 |
Target: 5'- gAAACCgacGGGCAgaUCGUUGGCGUCGa-- -3' miRNA: 3'- gUUUGG---CCCGU--GGCAGCCGUAGCcau -5' |
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23308 | 5' | -57.4 | NC_005259.1 | + | 61914 | 0.67 | 0.562213 |
Target: 5'- --cGCCGGuCGUCGUCGGCAgcUCGGUc -3' miRNA: 3'- guuUGGCCcGUGGCAGCCGU--AGCCAu -5' |
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23308 | 5' | -57.4 | NC_005259.1 | + | 54225 | 0.68 | 0.541248 |
Target: 5'- --uACCGGGCAUaggGUCGGUccuccuaaGUCGGg- -3' miRNA: 3'- guuUGGCCCGUGg--CAGCCG--------UAGCCau -5' |
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23308 | 5' | -57.4 | NC_005259.1 | + | 9706 | 0.68 | 0.541248 |
Target: 5'- --cACUGGGCACCGUCcucgGGC--CGGUc -3' miRNA: 3'- guuUGGCCCGUGGCAG----CCGuaGCCAu -5' |
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23308 | 5' | -57.4 | NC_005259.1 | + | 27387 | 0.68 | 0.541248 |
Target: 5'- -uGACCGgcGGCGgUGUCGGCAgcggcggcagcUCGGUGc -3' miRNA: 3'- guUUGGC--CCGUgGCAGCCGU-----------AGCCAU- -5' |
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23308 | 5' | -57.4 | NC_005259.1 | + | 57310 | 0.68 | 0.510318 |
Target: 5'- --cAUCGaGCACCGgCGGUGUCGGUGu -3' miRNA: 3'- guuUGGCcCGUGGCaGCCGUAGCCAU- -5' |
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23308 | 5' | -57.4 | NC_005259.1 | + | 40136 | 0.68 | 0.500171 |
Target: 5'- ----gCGGGCgagcucGCCGUCGGuUGUCGGUGc -3' miRNA: 3'- guuugGCCCG------UGGCAGCC-GUAGCCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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