miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23311 5' -54.5 NC_005259.1 + 15281 1.09 0.001597
Target:  5'- cGACGAGCAAGCGAUCUACACCGCCGAc -3'
miRNA:   3'- -CUGCUCGUUCGCUAGAUGUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 18492 0.84 0.089162
Target:  5'- cGACGAGCuacgccgacgaccucAGCGAUCUGC-CCGCCGAu -3'
miRNA:   3'- -CUGCUCGu--------------UCGCUAGAUGuGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 41792 0.75 0.327871
Target:  5'- cGGCGAGCAgucggcaGGCGGUUUGCACU-CCGAc -3'
miRNA:   3'- -CUGCUCGU-------UCGCUAGAUGUGGcGGCU- -5'
23311 5' -54.5 NC_005259.1 + 24111 0.75 0.336672
Target:  5'- cGAUGGGacCGGGCGGggaCUACACCGCCGc -3'
miRNA:   3'- -CUGCUC--GUUCGCUa--GAUGUGGCGGCu -5'
23311 5' -54.5 NC_005259.1 + 29059 0.73 0.386771
Target:  5'- cGCGAGCGcgguaucGGCccGAUCUGCGCUGCCa- -3'
miRNA:   3'- cUGCUCGU-------UCG--CUAGAUGUGGCGGcu -5'
23311 5' -54.5 NC_005259.1 + 46898 0.73 0.395736
Target:  5'- cGAUGAGCGcccgccgAGCaGUCcgcgUGCGCCGCCGAg -3'
miRNA:   3'- -CUGCUCGU-------UCGcUAG----AUGUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 6245 0.73 0.396639
Target:  5'- gGGCGAGUggGuCGAUaucccGCACCGCCGc -3'
miRNA:   3'- -CUGCUCGuuC-GCUAga---UGUGGCGGCu -5'
23311 5' -54.5 NC_005259.1 + 6052 0.73 0.396639
Target:  5'- cGACGAGCucgugugcGCGGUgauCGCCGCCGAa -3'
miRNA:   3'- -CUGCUCGuu------CGCUAgauGUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 725 0.73 0.424361
Target:  5'- cGCGAGaaucacaccGGCGGUgcCUACGCCGCCGGu -3'
miRNA:   3'- cUGCUCgu-------UCGCUA--GAUGUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 8422 0.72 0.443473
Target:  5'- uGGCGAGCAuGCGAUgCU-CGuuGCCGGu -3'
miRNA:   3'- -CUGCUCGUuCGCUA-GAuGUggCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 63571 0.71 0.503529
Target:  5'- cGACGAGCGGGaua--UACGCCGCCu- -3'
miRNA:   3'- -CUGCUCGUUCgcuagAUGUGGCGGcu -5'
23311 5' -54.5 NC_005259.1 + 24904 0.71 0.524334
Target:  5'- gGACG-GCGAGCgGGUCUACACCGa--- -3'
miRNA:   3'- -CUGCuCGUUCG-CUAGAUGUGGCggcu -5'
23311 5' -54.5 NC_005259.1 + 10660 0.71 0.524334
Target:  5'- -uCGAGCGccuugaGGaUGGUCUGCGCCGCCu- -3'
miRNA:   3'- cuGCUCGU------UC-GCUAGAUGUGGCGGcu -5'
23311 5' -54.5 NC_005259.1 + 41652 0.71 0.544396
Target:  5'- uGCGGGCGcucggugAGCGGgaUCUGCACCGCg-- -3'
miRNA:   3'- cUGCUCGU-------UCGCU--AGAUGUGGCGgcu -5'
23311 5' -54.5 NC_005259.1 + 26020 0.71 0.545459
Target:  5'- gGAUGGccGCAAGCGGguuggccagCaGCGCCGCCGGg -3'
miRNA:   3'- -CUGCU--CGUUCGCUa--------GaUGUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 3102 0.7 0.556125
Target:  5'- cGAUGAGCGGGCGGccauugCgcgGCACCGUgGGc -3'
miRNA:   3'- -CUGCUCGUUCGCUa-----Ga--UGUGGCGgCU- -5'
23311 5' -54.5 NC_005259.1 + 41553 0.7 0.56685
Target:  5'- -uCGucGCGAGCG--UUACACCGCCGGa -3'
miRNA:   3'- cuGCu-CGUUCGCuaGAUGUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 12307 0.7 0.56685
Target:  5'- uGCGGGCAAuGuCGGUgcGCACCGCCGc -3'
miRNA:   3'- cUGCUCGUU-C-GCUAgaUGUGGCGGCu -5'
23311 5' -54.5 NC_005259.1 + 8542 0.7 0.581951
Target:  5'- cGAUGAGCucGGCGGUgUagcccaugcgccgcaGCACCGCCa- -3'
miRNA:   3'- -CUGCUCGu-UCGCUAgA---------------UGUGGCGGcu -5'
23311 5' -54.5 NC_005259.1 + 21594 0.7 0.58845
Target:  5'- uGCGAcaccGcCAAGCuGAUCUACACCaCCGAg -3'
miRNA:   3'- cUGCU----C-GUUCG-CUAGAUGUGGcGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.