miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23311 5' -54.5 NC_005259.1 + 265 0.69 0.610192
Target:  5'- aACG-GCuagGGCGGUgUACGCCGCCu- -3'
miRNA:   3'- cUGCuCGu--UCGCUAgAUGUGGCGGcu -5'
23311 5' -54.5 NC_005259.1 + 725 0.73 0.424361
Target:  5'- cGCGAGaaucacaccGGCGGUgcCUACGCCGCCGGu -3'
miRNA:   3'- cUGCUCgu-------UCGCUA--GAUGUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 1817 0.68 0.697142
Target:  5'- cGCGAGCAAucccGcCGAcCUGCucgccgcuGCCGCCGAg -3'
miRNA:   3'- cUGCUCGUU----C-GCUaGAUG--------UGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 3102 0.7 0.556125
Target:  5'- cGAUGAGCGGGCGGccauugCgcgGCACCGUgGGc -3'
miRNA:   3'- -CUGCUCGUUCGCUa-----Ga--UGUGGCGgCU- -5'
23311 5' -54.5 NC_005259.1 + 4263 0.68 0.68638
Target:  5'- uGCGAGgacaaCGGGCGG-CUGCGCUGCCa- -3'
miRNA:   3'- cUGCUC-----GUUCGCUaGAUGUGGCGGcu -5'
23311 5' -54.5 NC_005259.1 + 4663 0.67 0.727965
Target:  5'- uACGGGCAcGGUG-UCUGCACUggcucggGCCGAc -3'
miRNA:   3'- cUGCUCGU-UCGCuAGAUGUGG-------CGGCU- -5'
23311 5' -54.5 NC_005259.1 + 5082 0.68 0.718471
Target:  5'- cGACGGGCcggugucaccGGCGAUCUGCguagACCGCg-- -3'
miRNA:   3'- -CUGCUCGu---------UCGCUAGAUG----UGGCGgcu -5'
23311 5' -54.5 NC_005259.1 + 5496 0.68 0.675566
Target:  5'- -cCGAGCGAGgauCGAgCUACGCgCGCCGc -3'
miRNA:   3'- cuGCUCGUUC---GCUaGAUGUG-GCGGCu -5'
23311 5' -54.5 NC_005259.1 + 5874 0.66 0.827386
Target:  5'- cACGAGCAcaucaaCGAUC-AUGCCGUCGAc -3'
miRNA:   3'- cUGCUCGUuc----GCUAGaUGUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 6052 0.73 0.396639
Target:  5'- cGACGAGCucgugugcGCGGUgauCGCCGCCGAa -3'
miRNA:   3'- -CUGCUCGuu------CGCUAgauGUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 6245 0.73 0.396639
Target:  5'- gGGCGAGUggGuCGAUaucccGCACCGCCGc -3'
miRNA:   3'- -CUGCUCGuuC-GCUAga---UGUGGCGGCu -5'
23311 5' -54.5 NC_005259.1 + 8422 0.72 0.443473
Target:  5'- uGGCGAGCAuGCGAUgCU-CGuuGCCGGu -3'
miRNA:   3'- -CUGCUCGUuCGCUA-GAuGUggCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 8542 0.7 0.581951
Target:  5'- cGAUGAGCucGGCGGUgUagcccaugcgccgcaGCACCGCCa- -3'
miRNA:   3'- -CUGCUCGu-UCGCUAgA---------------UGUGGCGGcu -5'
23311 5' -54.5 NC_005259.1 + 10660 0.71 0.524334
Target:  5'- -uCGAGCGccuugaGGaUGGUCUGCGCCGCCu- -3'
miRNA:   3'- cuGCUCGU------UC-GCUAGAUGUGGCGGcu -5'
23311 5' -54.5 NC_005259.1 + 12236 0.66 0.79953
Target:  5'- -cCGGGCAA-UGGUC-ACACCGCCu- -3'
miRNA:   3'- cuGCUCGUUcGCUAGaUGUGGCGGcu -5'
23311 5' -54.5 NC_005259.1 + 12307 0.7 0.56685
Target:  5'- uGCGGGCAAuGuCGGUgcGCACCGCCGc -3'
miRNA:   3'- cUGCUCGUU-C-GCUAgaUGUGGCGGCu -5'
23311 5' -54.5 NC_005259.1 + 12539 0.66 0.809001
Target:  5'- -cCGAGCGAGCcccacgGCAUUGCCGGg -3'
miRNA:   3'- cuGCUCGUUCGcuaga-UGUGGCGGCU- -5'
23311 5' -54.5 NC_005259.1 + 12990 0.66 0.816447
Target:  5'- cGugGuGCucGCGuucgcacucggCUACGCCGCCGc -3'
miRNA:   3'- -CugCuCGuuCGCua---------GAUGUGGCGGCu -5'
23311 5' -54.5 NC_005259.1 + 13788 0.68 0.697142
Target:  5'- cGACGAGCAGugguGCGAcau-CACCGgCGAg -3'
miRNA:   3'- -CUGCUCGUU----CGCUagauGUGGCgGCU- -5'
23311 5' -54.5 NC_005259.1 + 14520 0.68 0.664712
Target:  5'- cGGCGAGCAcGCGGUgCguuuCGgUGCCGAg -3'
miRNA:   3'- -CUGCUCGUuCGCUA-Gau--GUgGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.