miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23313 3' -57.2 NC_005259.1 + 34959 0.73 0.287262
Target:  5'- -aGCCCAcugugaAUCAggggUCGGUGUCGGUGCGg -3'
miRNA:   3'- gaCGGGU------UGGU----GGCUACAGCCACGCa -5'
23313 3' -57.2 NC_005259.1 + 35294 0.66 0.672714
Target:  5'- gUGCCCcuugaaguaGAUgACCGAgggCGGUGUGUa -3'
miRNA:   3'- gACGGG---------UUGgUGGCUacaGCCACGCA- -5'
23313 3' -57.2 NC_005259.1 + 35565 0.66 0.676967
Target:  5'- uUGCcgCCGACCGCCGAgaUcccguuguagcugagGUCGgGUGCGUc -3'
miRNA:   3'- gACG--GGUUGGUGGCU--A---------------CAGC-CACGCA- -5'
23313 3' -57.2 NC_005259.1 + 37535 0.66 0.640675
Target:  5'- -cGUCgGGCCGCCGuUGUUGcGUGUGg -3'
miRNA:   3'- gaCGGgUUGGUGGCuACAGC-CACGCa -5'
23313 3' -57.2 NC_005259.1 + 37639 0.71 0.364317
Target:  5'- gCUGCCCGaugaccgcaccGCCGCCGccGcCGGUGCc- -3'
miRNA:   3'- -GACGGGU-----------UGGUGGCuaCaGCCACGca -5'
23313 3' -57.2 NC_005259.1 + 39775 0.68 0.524364
Target:  5'- -aGCCU-GCUGCUGGUGaUCGGUGCGc -3'
miRNA:   3'- gaCGGGuUGGUGGCUAC-AGCCACGCa -5'
23313 3' -57.2 NC_005259.1 + 40873 0.68 0.555546
Target:  5'- -cGCCCAcagcucaccgGCCACCGuggcgggGUCGGcaGCGUc -3'
miRNA:   3'- gaCGGGU----------UGGUGGCua-----CAGCCa-CGCA- -5'
23313 3' -57.2 NC_005259.1 + 44386 0.7 0.416964
Target:  5'- -cGCCCAugaugUCGCCGAgcacGUCGGUGCc- -3'
miRNA:   3'- gaCGGGUu----GGUGGCUa---CAGCCACGca -5'
23313 3' -57.2 NC_005259.1 + 45840 0.69 0.493872
Target:  5'- -cGUCCGcACCACCGggGcCGGUGgGa -3'
miRNA:   3'- gaCGGGU-UGGUGGCuaCaGCCACgCa -5'
23313 3' -57.2 NC_005259.1 + 46070 0.7 0.444971
Target:  5'- gCUGCUCAagcACCGCCGggGcgagCGGUGCc- -3'
miRNA:   3'- -GACGGGU---UGGUGGCuaCa---GCCACGca -5'
23313 3' -57.2 NC_005259.1 + 46971 0.67 0.608568
Target:  5'- uUGgCCAcGCCGCCGAUGaUCGGgccgagggUGCGc -3'
miRNA:   3'- gACgGGU-UGGUGGCUAC-AGCC--------ACGCa -5'
23313 3' -57.2 NC_005259.1 + 48164 0.66 0.637463
Target:  5'- -cGCCCGaaaccgcccccgccGCCGCCgGGUGUCGGaccggGCa- -3'
miRNA:   3'- gaCGGGU--------------UGGUGG-CUACAGCCa----CGca -5'
23313 3' -57.2 NC_005259.1 + 50341 0.68 0.555546
Target:  5'- -gGCCCuuguCCucggucaCGAUGUCGGUGUGc -3'
miRNA:   3'- gaCGGGuu--GGug-----GCUACAGCCACGCa -5'
23313 3' -57.2 NC_005259.1 + 57302 0.68 0.534689
Target:  5'- gUGCacgaCAucgagcACCGgCGGUGUCGGUGUGg -3'
miRNA:   3'- gACGg---GU------UGGUgGCUACAGCCACGCa -5'
23313 3' -57.2 NC_005259.1 + 60280 0.75 0.217969
Target:  5'- gCUGCCgggCGGCCAUCGucGUCGGUGCGg -3'
miRNA:   3'- -GACGG---GUUGGUGGCuaCAGCCACGCa -5'
23313 3' -57.2 NC_005259.1 + 60495 0.7 0.416964
Target:  5'- -cGCCCAGCacgCGCCGGUGUUGucguaGUGCGc -3'
miRNA:   3'- gaCGGGUUG---GUGGCUACAGC-----CACGCa -5'
23313 3' -57.2 NC_005259.1 + 61370 0.66 0.698123
Target:  5'- -gGUCCAACCAccugcugccacacgcCCGAUgccGUCGGUGUc- -3'
miRNA:   3'- gaCGGGUUGGU---------------GGCUA---CAGCCACGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.