miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23313 3' -57.2 NC_005259.1 + 2725 0.68 0.545085
Target:  5'- uCUGCUCAacACCACCGAUGcCGaggucgccgucGUGCa- -3'
miRNA:   3'- -GACGGGU--UGGUGGCUACaGC-----------CACGca -5'
23313 3' -57.2 NC_005259.1 + 3170 0.69 0.493872
Target:  5'- aUGCCCGGCgAUgucaaGGUcGUCGGUGCGc -3'
miRNA:   3'- gACGGGUUGgUGg----CUA-CAGCCACGCa -5'
23313 3' -57.2 NC_005259.1 + 6423 0.76 0.186544
Target:  5'- -gGCCCGACCucGCCGAUGUCGGcacCGUc -3'
miRNA:   3'- gaCGGGUUGG--UGGCUACAGCCac-GCA- -5'
23313 3' -57.2 NC_005259.1 + 7224 0.66 0.65565
Target:  5'- uCUGCgugaugaacgacggCAGCCgcGCCGGUGUCGaGUGCGc -3'
miRNA:   3'- -GACGg-------------GUUGG--UGGCUACAGC-CACGCa -5'
23313 3' -57.2 NC_005259.1 + 9552 0.66 0.693909
Target:  5'- gCUGCCCGGCCucgACCGc-GUCGGcgagGUGc -3'
miRNA:   3'- -GACGGGUUGG---UGGCuaCAGCCa---CGCa -5'
23313 3' -57.2 NC_005259.1 + 9968 0.69 0.474001
Target:  5'- -cGCCCGACCACCGcaccgGUCGaG-GUGg -3'
miRNA:   3'- gaCGGGUUGGUGGCua---CAGC-CaCGCa -5'
23313 3' -57.2 NC_005259.1 + 11992 0.7 0.439285
Target:  5'- gCUGCaCCAGCaCAUCGAuagagucgguggccuUGUaCGGUGCGg -3'
miRNA:   3'- -GACG-GGUUG-GUGGCU---------------ACA-GCCACGCa -5'
23313 3' -57.2 NC_005259.1 + 14288 1.08 0.001063
Target:  5'- cCUGCCCAACCACCGAUGUCGGUGCGUa -3'
miRNA:   3'- -GACGGGUUGGUGGCUACAGCCACGCA- -5'
23313 3' -57.2 NC_005259.1 + 14504 0.69 0.50395
Target:  5'- gUGCCCGcauGCaCACCGgcGagcacgCGGUGCGUu -3'
miRNA:   3'- gACGGGU---UG-GUGGCuaCa-----GCCACGCA- -5'
23313 3' -57.2 NC_005259.1 + 18309 0.73 0.273481
Target:  5'- uCUGCCCGGugugcgaCACCGAgGcCGGUGCGUu -3'
miRNA:   3'- -GACGGGUUg------GUGGCUaCaGCCACGCA- -5'
23313 3' -57.2 NC_005259.1 + 19057 0.71 0.372766
Target:  5'- -aGC---GCCACCGAUGUCGGUGUc- -3'
miRNA:   3'- gaCGgguUGGUGGCUACAGCCACGca -5'
23313 3' -57.2 NC_005259.1 + 23127 0.67 0.629968
Target:  5'- gCUGUCCGG-CAgCGAUGUgacgUGGUGCGa -3'
miRNA:   3'- -GACGGGUUgGUgGCUACA----GCCACGCa -5'
23313 3' -57.2 NC_005259.1 + 26356 0.67 0.619262
Target:  5'- -gGCCgAGCUGCgcguaGAUGUCGGUGgCGa -3'
miRNA:   3'- gaCGGgUUGGUGg----CUACAGCCAC-GCa -5'
23313 3' -57.2 NC_005259.1 + 27374 0.66 0.662057
Target:  5'- gUGCCCGGCacggugaccggCGgCGGUGUCGGcagcgGCGg -3'
miRNA:   3'- gACGGGUUG-----------GUgGCUACAGCCa----CGCa -5'
23313 3' -57.2 NC_005259.1 + 28266 0.67 0.597893
Target:  5'- uUGCCCGAaaccgucggcuCUGCCGAUGUaggccaCGGUGCc- -3'
miRNA:   3'- gACGGGUU-----------GGUGGCUACA------GCCACGca -5'
23313 3' -57.2 NC_005259.1 + 28953 0.74 0.260235
Target:  5'- cCUGCgCCGcAUCGCCGAgGUCGGUGCc- -3'
miRNA:   3'- -GACG-GGU-UGGUGGCUaCAGCCACGca -5'
23313 3' -57.2 NC_005259.1 + 30825 0.66 0.693909
Target:  5'- -aGUCCGGCgCGCCGAgGUCGGcaaccUGCa- -3'
miRNA:   3'- gaCGGGUUG-GUGGCUaCAGCC-----ACGca -5'
23313 3' -57.2 NC_005259.1 + 31120 0.68 0.534689
Target:  5'- -cGCCCGAugUCGCCGAUGaUCGGgaUGCu- -3'
miRNA:   3'- gaCGGGUU--GGUGGCUAC-AGCC--ACGca -5'
23313 3' -57.2 NC_005259.1 + 34062 0.68 0.566064
Target:  5'- uUGUCCGACCACgGcgG-CGGUGUc- -3'
miRNA:   3'- gACGGGUUGGUGgCuaCaGCCACGca -5'
23313 3' -57.2 NC_005259.1 + 34356 0.7 0.435517
Target:  5'- gUGaCCC-ACCGCCGGUaUCGGcGCGUa -3'
miRNA:   3'- gAC-GGGuUGGUGGCUAcAGCCaCGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.