miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23313 3' -57.2 NC_005259.1 + 14288 1.08 0.001063
Target:  5'- cCUGCCCAACCACCGAUGUCGGUGCGUa -3'
miRNA:   3'- -GACGGGUUGGUGGCUACAGCCACGCA- -5'
23313 3' -57.2 NC_005259.1 + 6423 0.76 0.186544
Target:  5'- -gGCCCGACCucGCCGAUGUCGGcacCGUc -3'
miRNA:   3'- gaCGGGUUGG--UGGCUACAGCCac-GCA- -5'
23313 3' -57.2 NC_005259.1 + 60280 0.75 0.217969
Target:  5'- gCUGCCgggCGGCCAUCGucGUCGGUGCGg -3'
miRNA:   3'- -GACGG---GUUGGUGGCuaCAGCCACGCa -5'
23313 3' -57.2 NC_005259.1 + 28953 0.74 0.260235
Target:  5'- cCUGCgCCGcAUCGCCGAgGUCGGUGCc- -3'
miRNA:   3'- -GACG-GGU-UGGUGGCUaCAGCCACGca -5'
23313 3' -57.2 NC_005259.1 + 18309 0.73 0.273481
Target:  5'- uCUGCCCGGugugcgaCACCGAgGcCGGUGCGUu -3'
miRNA:   3'- -GACGGGUUg------GUGGCUaCaGCCACGCA- -5'
23313 3' -57.2 NC_005259.1 + 34959 0.73 0.287262
Target:  5'- -aGCCCAcugugaAUCAggggUCGGUGUCGGUGCGg -3'
miRNA:   3'- gaCGGGU------UGGU----GGCUACAGCCACGCa -5'
23313 3' -57.2 NC_005259.1 + 37639 0.71 0.364317
Target:  5'- gCUGCCCGaugaccgcaccGCCGCCGccGcCGGUGCc- -3'
miRNA:   3'- -GACGGGU-----------UGGUGGCuaCaGCCACGca -5'
23313 3' -57.2 NC_005259.1 + 19057 0.71 0.372766
Target:  5'- -aGC---GCCACCGAUGUCGGUGUc- -3'
miRNA:   3'- gaCGgguUGGUGGCUACAGCCACGca -5'
23313 3' -57.2 NC_005259.1 + 44386 0.7 0.416964
Target:  5'- -cGCCCAugaugUCGCCGAgcacGUCGGUGCc- -3'
miRNA:   3'- gaCGGGUu----GGUGGCUa---CAGCCACGca -5'
23313 3' -57.2 NC_005259.1 + 60495 0.7 0.416964
Target:  5'- -cGCCCAGCacgCGCCGGUGUUGucguaGUGCGc -3'
miRNA:   3'- gaCGGGUUG---GUGGCUACAGC-----CACGCa -5'
23313 3' -57.2 NC_005259.1 + 34356 0.7 0.435517
Target:  5'- gUGaCCC-ACCGCCGGUaUCGGcGCGUa -3'
miRNA:   3'- gAC-GGGuUGGUGGCUAcAGCCaCGCA- -5'
23313 3' -57.2 NC_005259.1 + 11992 0.7 0.439285
Target:  5'- gCUGCaCCAGCaCAUCGAuagagucgguggccuUGUaCGGUGCGg -3'
miRNA:   3'- -GACG-GGUUG-GUGGCU---------------ACA-GCCACGCa -5'
23313 3' -57.2 NC_005259.1 + 46070 0.7 0.444971
Target:  5'- gCUGCUCAagcACCGCCGggGcgagCGGUGCc- -3'
miRNA:   3'- -GACGGGU---UGGUGGCuaCa---GCCACGca -5'
23313 3' -57.2 NC_005259.1 + 9968 0.69 0.474001
Target:  5'- -cGCCCGACCACCGcaccgGUCGaG-GUGg -3'
miRNA:   3'- gaCGGGUUGGUGGCua---CAGC-CaCGCa -5'
23313 3' -57.2 NC_005259.1 + 45840 0.69 0.493872
Target:  5'- -cGUCCGcACCACCGggGcCGGUGgGa -3'
miRNA:   3'- gaCGGGU-UGGUGGCuaCaGCCACgCa -5'
23313 3' -57.2 NC_005259.1 + 3170 0.69 0.493872
Target:  5'- aUGCCCGGCgAUgucaaGGUcGUCGGUGCGc -3'
miRNA:   3'- gACGGGUUGgUGg----CUA-CAGCCACGCa -5'
23313 3' -57.2 NC_005259.1 + 14504 0.69 0.50395
Target:  5'- gUGCCCGcauGCaCACCGgcGagcacgCGGUGCGUu -3'
miRNA:   3'- gACGGGU---UG-GUGGCuaCa-----GCCACGCA- -5'
23313 3' -57.2 NC_005259.1 + 39775 0.68 0.524364
Target:  5'- -aGCCU-GCUGCUGGUGaUCGGUGCGc -3'
miRNA:   3'- gaCGGGuUGGUGGCUAC-AGCCACGCa -5'
23313 3' -57.2 NC_005259.1 + 57302 0.68 0.534689
Target:  5'- gUGCacgaCAucgagcACCGgCGGUGUCGGUGUGg -3'
miRNA:   3'- gACGg---GU------UGGUgGCUACAGCCACGCa -5'
23313 3' -57.2 NC_005259.1 + 31120 0.68 0.534689
Target:  5'- -cGCCCGAugUCGCCGAUGaUCGGgaUGCu- -3'
miRNA:   3'- gaCGGGUU--GGUGGCUAC-AGCC--ACGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.