miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23313 5' -67.4 NC_005259.1 + 18294 0.71 0.121038
Target:  5'- cCGACgaGCCGCCguucuGCCCgGUGUGCGacaccgaGGCCGg -3'
miRNA:   3'- -GCUG--CGGCGG-----CGGG-CGCACGC-------CCGGC- -5'
23313 5' -67.4 NC_005259.1 + 26418 0.73 0.087102
Target:  5'- gCGGUGCCGCCGUagaacgcaCCGCcgagcggGCGGGCCGg -3'
miRNA:   3'- -GCUGCGGCGGCG--------GGCGca-----CGCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 26799 0.75 0.062835
Target:  5'- -aGCGCCGCCGCCCgguuggccgguaccgGCG-GUGGuGCCGg -3'
miRNA:   3'- gcUGCGGCGGCGGG---------------CGCaCGCC-CGGC- -5'
23313 5' -67.4 NC_005259.1 + 27193 0.73 0.082727
Target:  5'- gCGACGCUGgaacucCCGCaCCGCGagcucggugaGCGGGCCGa -3'
miRNA:   3'- -GCUGCGGC------GGCG-GGCGCa---------CGCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 29934 0.69 0.159699
Target:  5'- gCGugGCCGCCacgcgGCCCggucGCGgcuggugggGCGGGCgGu -3'
miRNA:   3'- -GCugCGGCGG-----CGGG----CGCa--------CGCCCGgC- -5'
23313 5' -67.4 NC_005259.1 + 30085 0.66 0.246186
Target:  5'- cCGAUGUCGaCCGCCCuCGU-CGGaGCUGu -3'
miRNA:   3'- -GCUGCGGC-GGCGGGcGCAcGCC-CGGC- -5'
23313 5' -67.4 NC_005259.1 + 30363 0.7 0.130534
Target:  5'- gGACGCCGauCUGCCCGC-UGCccggcgagaaaccGGGCCu -3'
miRNA:   3'- gCUGCGGC--GGCGGGCGcACG-------------CCCGGc -5'
23313 5' -67.4 NC_005259.1 + 32316 0.69 0.151993
Target:  5'- uGA-GCCGCaguGCCCGCcaauuGUGCGcGGCCa -3'
miRNA:   3'- gCUgCGGCGg--CGGGCG-----CACGC-CCGGc -5'
23313 5' -67.4 NC_005259.1 + 33551 0.7 0.137586
Target:  5'- uCGuCGCCGgucaggaagaaCCGCCCgaacuugaccGCGUcGCGGGCCa -3'
miRNA:   3'- -GCuGCGGC-----------GGCGGG----------CGCA-CGCCCGGc -5'
23313 5' -67.4 NC_005259.1 + 35643 0.68 0.189508
Target:  5'- cCGcCGCUGCCGCUgGCGaGgGuGGCCa -3'
miRNA:   3'- -GCuGCGGCGGCGGgCGCaCgC-CCGGc -5'
23313 5' -67.4 NC_005259.1 + 35689 0.67 0.234925
Target:  5'- gCGACGCCG-UGCCCgGCGaG-GGGUCGc -3'
miRNA:   3'- -GCUGCGGCgGCGGG-CGCaCgCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 35967 0.66 0.276294
Target:  5'- cCGugGUCGCUGUCaacgGCGggaaaccgacgGCGaGGCCGg -3'
miRNA:   3'- -GCugCGGCGGCGGg---CGCa----------CGC-CCGGC- -5'
23313 5' -67.4 NC_005259.1 + 36630 0.69 0.151993
Target:  5'- -cGCGCCGCCcgcaagGCCCGCGaucaGCGaGCCGc -3'
miRNA:   3'- gcUGCGGCGG------CGGGCGCa---CGCcCGGC- -5'
23313 5' -67.4 NC_005259.1 + 37215 0.71 0.124443
Target:  5'- cCGcCGCCGCCGCCgGgGcGCuGGCCc -3'
miRNA:   3'- -GCuGCGGCGGCGGgCgCaCGcCCGGc -5'
23313 5' -67.4 NC_005259.1 + 37398 0.69 0.161282
Target:  5'- gCGcCGCCcaugguguuguugacGCCGCCCGcCGUGCcauuGGCCa -3'
miRNA:   3'- -GCuGCGG---------------CGGCGGGC-GCACGc---CCGGc -5'
23313 5' -67.4 NC_005259.1 + 37537 0.67 0.234925
Target:  5'- uCGG-GCCGCCGUugUUGCGUGUGGuGuCCGa -3'
miRNA:   3'- -GCUgCGGCGGCG--GGCGCACGCC-C-GGC- -5'
23313 5' -67.4 NC_005259.1 + 37570 0.75 0.054562
Target:  5'- uCGACuGCuCGCCGCCCGCGccgaucUGCaagcugaacgucGGGCCGa -3'
miRNA:   3'- -GCUG-CG-GCGGCGGGCGC------ACG------------CCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 38727 0.66 0.263911
Target:  5'- cCGcUGCCGCCguaccggcggugGCCCGCc-GCaGGCCGg -3'
miRNA:   3'- -GCuGCGGCGG------------CGGGCGcaCGcCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 39899 0.74 0.067238
Target:  5'- uGuCGCCGCCGCCCGCcucgauccGUcgaGGGCCGc -3'
miRNA:   3'- gCuGCGGCGGCGGGCG--------CAcg-CCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 41402 0.68 0.203721
Target:  5'- uGGCG-CGCCGCUCGgggugcccacgaUGUGCacGGGCCGc -3'
miRNA:   3'- gCUGCgGCGGCGGGC------------GCACG--CCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.