miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23313 5' -67.4 NC_005259.1 + 780 0.66 0.276294
Target:  5'- cCGAgGCgGCUGCCCuCGguugggugGCcaagGGGCCGg -3'
miRNA:   3'- -GCUgCGgCGGCGGGcGCa-------CG----CCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 1365 0.68 0.194146
Target:  5'- gGGcCGCuCGCCGCgCCGCccGCGaGGCCc -3'
miRNA:   3'- gCU-GCG-GCGGCG-GGCGcaCGC-CCGGc -5'
23313 5' -67.4 NC_005259.1 + 1858 0.68 0.184519
Target:  5'- cCGAgaaaGCCGCCG-CCGCGUuccguaaGCaGGCCGc -3'
miRNA:   3'- -GCUg---CGGCGGCgGGCGCA-------CGcCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 4434 0.68 0.198884
Target:  5'- cCGAgGUCgaGCCGCCCGUGcgaGUGGGCa- -3'
miRNA:   3'- -GCUgCGG--CGGCGGGCGCa--CGCCCGgc -5'
23313 5' -67.4 NC_005259.1 + 5192 0.69 0.159699
Target:  5'- cCGACGCCGCCGCCaaGCucaccGCGcucGCCGa -3'
miRNA:   3'- -GCUGCGGCGGCGGg-CGca---CGCc--CGGC- -5'
23313 5' -67.4 NC_005259.1 + 6117 0.66 0.276294
Target:  5'- cCGAgGCCGCCGCUac---GCGGGCa- -3'
miRNA:   3'- -GCUgCGGCGGCGGgcgcaCGCCCGgc -5'
23313 5' -67.4 NC_005259.1 + 8659 0.66 0.276294
Target:  5'- uGugGUCggGCUGCCaCGCGgGCaacgGGGCCGc -3'
miRNA:   3'- gCugCGG--CGGCGG-GCGCaCG----CCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 8884 0.7 0.135536
Target:  5'- -cACGCCGCCugagcgucacgcucgGCCUGC-UGaCGGGCCGc -3'
miRNA:   3'- gcUGCGGCGG---------------CGGGCGcAC-GCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 9692 0.66 0.263911
Target:  5'- uCGAgGUCGCCGCucacugggcaCCGUccuCGGGCCGg -3'
miRNA:   3'- -GCUgCGGCGGCG----------GGCGcacGCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 9807 0.7 0.148267
Target:  5'- -cGCGCCacuaCCGCCCGCaccgccggGUGCGGcGCUGg -3'
miRNA:   3'- gcUGCGGc---GGCGGGCG--------CACGCC-CGGC- -5'
23313 5' -67.4 NC_005259.1 + 12217 0.67 0.240501
Target:  5'- cCGGCGCa-CCGCCCGCuG-GCcGGGCa- -3'
miRNA:   3'- -GCUGCGgcGGCGGGCG-CaCG-CCCGgc -5'
23313 5' -67.4 NC_005259.1 + 12289 0.73 0.084888
Target:  5'- -cACGCCGCCGCgCCuCGaUGCGGGCa- -3'
miRNA:   3'- gcUGCGGCGGCG-GGcGC-ACGCCCGgc -5'
23313 5' -67.4 NC_005259.1 + 14225 0.67 0.20866
Target:  5'- cCGGCGCgCGUCGUgCGUau-CGGGCCGg -3'
miRNA:   3'- -GCUGCG-GCGGCGgGCGcacGCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 14325 1.06 0.000196
Target:  5'- uCGACGCCGCCGCCCGCGUGCGGGCCGc -3'
miRNA:   3'- -GCUGCGGCGGCGGGCGCACGCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 14727 0.66 0.251982
Target:  5'- -cGCGCuCGUCGCCgagauguaCGCGcugGcCGGGCCGg -3'
miRNA:   3'- gcUGCG-GCGGCGG--------GCGCa--C-GCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 15393 0.68 0.198405
Target:  5'- cCGugGCCGCgcacucccaagggUGCgCUGCGUGCcaccaaGGCCGa -3'
miRNA:   3'- -GCugCGGCG-------------GCG-GGCGCACGc-----CCGGC- -5'
23313 5' -67.4 NC_005259.1 + 16793 0.66 0.276294
Target:  5'- uCGACGCgGUCGCguacaUCGCGcucgGGGCCGg -3'
miRNA:   3'- -GCUGCGgCGGCG-----GGCGCacg-CCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 17184 0.69 0.171919
Target:  5'- gCGGCGCaggaaGCCGCgCGUGagGCGGGUa- -3'
miRNA:   3'- -GCUGCGg----CGGCGgGCGCa-CGCCCGgc -5'
23313 5' -67.4 NC_005259.1 + 17583 0.66 0.263911
Target:  5'- cCGACGCUGCCGCgCaaccucggCGCGaugacGUGGGgCGg -3'
miRNA:   3'- -GCUGCGGCGGCG-G--------GCGCa----CGCCCgGC- -5'
23313 5' -67.4 NC_005259.1 + 17759 0.74 0.074598
Target:  5'- uGAgGCCGCCGCgCGC---CGGGCCGa -3'
miRNA:   3'- gCUgCGGCGGCGgGCGcacGCCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.