miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23313 5' -67.4 NC_005259.1 + 14325 1.06 0.000196
Target:  5'- uCGACGCCGCCGCCCGCGUGCGGGCCGc -3'
miRNA:   3'- -GCUGCGGCGGCGGGCGCACGCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 46884 0.78 0.0358
Target:  5'- -cGCGCCGCCGCCCGCGaugaGCGcccGCCGa -3'
miRNA:   3'- gcUGCGGCGGCGGGCGCa---CGCc--CGGC- -5'
23313 5' -67.4 NC_005259.1 + 44467 0.76 0.047852
Target:  5'- gGAUGCCGCCGCCC-UG-GcCGGGCCa -3'
miRNA:   3'- gCUGCGGCGGCGGGcGCaC-GCCCGGc -5'
23313 5' -67.4 NC_005259.1 + 45317 0.76 0.051775
Target:  5'- cCGAgGCCGCCGCCgaacUGCGUGgccugcgccgccUGGGCCGc -3'
miRNA:   3'- -GCUgCGGCGGCGG----GCGCAC------------GCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 37570 0.75 0.054562
Target:  5'- uCGACuGCuCGCCGCCCGCGccgaucUGCaagcugaacgucGGGCCGa -3'
miRNA:   3'- -GCUG-CG-GCGGCGGGCGC------ACG------------CCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 43963 0.75 0.057495
Target:  5'- gCGGgGCCGCCGCCUGaccgaGgGCGGuGCCGa -3'
miRNA:   3'- -GCUgCGGCGGCGGGCg----CaCGCC-CGGC- -5'
23313 5' -67.4 NC_005259.1 + 26799 0.75 0.062835
Target:  5'- -aGCGCCGCCGCCCgguuggccgguaccgGCG-GUGGuGCCGg -3'
miRNA:   3'- gcUGCGGCGGCGGG---------------CGCaCGCC-CGGC- -5'
23313 5' -67.4 NC_005259.1 + 39899 0.74 0.067238
Target:  5'- uGuCGCCGCCGCCCGCcucgauccGUcgaGGGCCGc -3'
miRNA:   3'- gCuGCGGCGGCGGGCG--------CAcg-CCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 51505 0.74 0.070459
Target:  5'- uCGACGCCGCCGaucucgaCgCGCGUGaccucgugcacgGGGCCGg -3'
miRNA:   3'- -GCUGCGGCGGCg------G-GCGCACg-----------CCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 17759 0.74 0.074598
Target:  5'- uGAgGCCGCCGCgCGC---CGGGCCGa -3'
miRNA:   3'- gCUgCGGCGGCGgGCGcacGCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 27193 0.73 0.082727
Target:  5'- gCGACGCUGgaacucCCGCaCCGCGagcucggugaGCGGGCCGa -3'
miRNA:   3'- -GCUGCGGC------GGCG-GGCGCa---------CGCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 12289 0.73 0.084888
Target:  5'- -cACGCCGCCGCgCCuCGaUGCGGGCa- -3'
miRNA:   3'- gcUGCGGCGGCG-GGcGC-ACGCCCGgc -5'
23313 5' -67.4 NC_005259.1 + 26418 0.73 0.087102
Target:  5'- gCGGUGCCGCCGUagaacgcaCCGCcgagcggGCGGGCCGg -3'
miRNA:   3'- -GCUGCGGCGGCG--------GGCGca-----CGCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 46774 0.72 0.099023
Target:  5'- cCGACaGCCG-CGCCCGC---CGGGCCGa -3'
miRNA:   3'- -GCUG-CGGCgGCGGGCGcacGCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 45964 0.72 0.100041
Target:  5'- cCGACGuuGCCgagcuuggcgaguguGUCCGCGUacaucuGCGGGUCGa -3'
miRNA:   3'- -GCUGCggCGG---------------CGGGCGCA------CGCCCGGC- -5'
23313 5' -67.4 NC_005259.1 + 60226 0.71 0.109652
Target:  5'- uCGGCGCUgagcucgcugGCaCGCuuGCGUGCGGGUg- -3'
miRNA:   3'- -GCUGCGG----------CG-GCGggCGCACGCCCGgc -5'
23313 5' -67.4 NC_005259.1 + 66251 0.71 0.118317
Target:  5'- uCGACGCagCGCgGCCCGCGc-CGGGCgGc -3'
miRNA:   3'- -GCUGCG--GCGgCGGGCGCacGCCCGgC- -5'
23313 5' -67.4 NC_005259.1 + 18294 0.71 0.121038
Target:  5'- cCGACgaGCCGCCguucuGCCCgGUGUGCGacaccgaGGCCGg -3'
miRNA:   3'- -GCUG--CGGCGG-----CGGG-CGCACGC-------CCGGC- -5'
23313 5' -67.4 NC_005259.1 + 37215 0.71 0.124443
Target:  5'- cCGcCGCCGCCGCCgGgGcGCuGGCCc -3'
miRNA:   3'- -GCuGCGGCGGCGGgCgCaCGcCCGGc -5'
23313 5' -67.4 NC_005259.1 + 41655 0.71 0.124443
Target:  5'- gGGCGCuCGgugagcgggauCUGCaCCGCGUGCGuGGCCa -3'
miRNA:   3'- gCUGCG-GC-----------GGCG-GGCGCACGC-CCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.