miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23316 3' -53.5 NC_005259.1 + 13750 1.11 0.00146
Target:  5'- gAGAUAUGCCAAGACCUCGCCGACGACg -3'
miRNA:   3'- -UCUAUACGGUUCUGGAGCGGCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 6417 0.76 0.302245
Target:  5'- uGAUGUgGCCc-GACCUCGCCGAuguCGGCa -3'
miRNA:   3'- uCUAUA-CGGuuCUGGAGCGGCU---GCUG- -5'
23316 3' -53.5 NC_005259.1 + 5711 0.75 0.349931
Target:  5'- -----cGCCAAGGCCagCGCCGgACGGCg -3'
miRNA:   3'- ucuauaCGGUUCUGGa-GCGGC-UGCUG- -5'
23316 3' -53.5 NC_005259.1 + 44549 0.75 0.349931
Target:  5'- ---cAUGCCGAGACCggcaggcagcgCGCCGAcCGGCa -3'
miRNA:   3'- ucuaUACGGUUCUGGa----------GCGGCU-GCUG- -5'
23316 3' -53.5 NC_005259.1 + 47919 0.74 0.402733
Target:  5'- uGAUGgcgucGCCGAGGCCcuggaaGCCGAUGACg -3'
miRNA:   3'- uCUAUa----CGGUUCUGGag----CGGCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 61513 0.73 0.480461
Target:  5'- cGGUGUGCCGGucGACCUCGUCGG-GAa -3'
miRNA:   3'- uCUAUACGGUU--CUGGAGCGGCUgCUg -5'
23316 3' -53.5 NC_005259.1 + 23638 0.73 0.480461
Target:  5'- cGGUGUgGUUucGGCC-CGCCGACGGCg -3'
miRNA:   3'- uCUAUA-CGGuuCUGGaGCGGCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 28969 0.72 0.490694
Target:  5'- gAGGUcgGUGCCGAGGCCgcgagCGCCcgcuACGGCc -3'
miRNA:   3'- -UCUA--UACGGUUCUGGa----GCGGc---UGCUG- -5'
23316 3' -53.5 NC_005259.1 + 8406 0.72 0.501027
Target:  5'- -----aGCCGGGccACCUCGCUGGCGAg -3'
miRNA:   3'- ucuauaCGGUUC--UGGAGCGGCUGCUg -5'
23316 3' -53.5 NC_005259.1 + 42920 0.72 0.501027
Target:  5'- uGGUG-GCCuugagcauGAGGcCCUCGCCGugGGCg -3'
miRNA:   3'- uCUAUaCGG--------UUCU-GGAGCGGCugCUG- -5'
23316 3' -53.5 NC_005259.1 + 810 0.71 0.553993
Target:  5'- aGGGgccggGUGUCGAGACCUCGCaCcACGAg -3'
miRNA:   3'- -UCUa----UACGGUUCUGGAGCG-GcUGCUg -5'
23316 3' -53.5 NC_005259.1 + 31028 0.71 0.553993
Target:  5'- uGAUcGUGCCGAucACCUCGCCGAacgcguCGACc -3'
miRNA:   3'- uCUA-UACGGUUc-UGGAGCGGCU------GCUG- -5'
23316 3' -53.5 NC_005259.1 + 68557 0.71 0.5648
Target:  5'- gGGGUGguugaGCCAaccgagguGGACCUCGuauCCGGCGGCc -3'
miRNA:   3'- -UCUAUa----CGGU--------UCUGGAGC---GGCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 17332 0.7 0.608493
Target:  5'- aGGGUGUGCCGGucaACgUCGCCGuCGAg -3'
miRNA:   3'- -UCUAUACGGUUc--UGgAGCGGCuGCUg -5'
23316 3' -53.5 NC_005259.1 + 46537 0.7 0.608493
Target:  5'- gGGAUc-GCCGAGAUCuggUCGCCGACcGCg -3'
miRNA:   3'- -UCUAuaCGGUUCUGG---AGCGGCUGcUG- -5'
23316 3' -53.5 NC_005259.1 + 64192 0.7 0.608493
Target:  5'- gGGAUcuuccucgAUGUC--GACCUCGCCGGuCGGCa -3'
miRNA:   3'- -UCUA--------UACGGuuCUGGAGCGGCU-GCUG- -5'
23316 3' -53.5 NC_005259.1 + 18489 0.7 0.630496
Target:  5'- -----cGCCGAcGAgCUaCGCCGACGACc -3'
miRNA:   3'- ucuauaCGGUU-CUgGA-GCGGCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 58461 0.7 0.640404
Target:  5'- uGAUcgcgGCCAccAGugCguggcugUCGCCGACGACa -3'
miRNA:   3'- uCUAua--CGGU--UCugG-------AGCGGCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 43135 0.7 0.641505
Target:  5'- -----aGCC----CCUCGCCGACGACa -3'
miRNA:   3'- ucuauaCGGuucuGGAGCGGCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 47952 0.7 0.652505
Target:  5'- cGGcgGUGCCGAuGGCCgccgCGCCGcccGCGAa -3'
miRNA:   3'- -UCuaUACGGUU-CUGGa---GCGGC---UGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.