miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23316 3' -53.5 NC_005259.1 + 810 0.71 0.553993
Target:  5'- aGGGgccggGUGUCGAGACCUCGCaCcACGAg -3'
miRNA:   3'- -UCUa----UACGGUUCUGGAGCG-GcUGCUg -5'
23316 3' -53.5 NC_005259.1 + 2221 0.66 0.8357
Target:  5'- cGAgc-GCCc-GGCCUCGCCauuugucGGCGACa -3'
miRNA:   3'- uCUauaCGGuuCUGGAGCGG-------CUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 4100 0.67 0.818451
Target:  5'- gGGAcugAUGCCAA-ACCUCGgCGGCcucGACg -3'
miRNA:   3'- -UCUa--UACGGUUcUGGAGCgGCUG---CUG- -5'
23316 3' -53.5 NC_005259.1 + 4333 0.68 0.769866
Target:  5'- ---cGUGCC-GGACCUCGUCG-CGGu -3'
miRNA:   3'- ucuaUACGGuUCUGGAGCGGCuGCUg -5'
23316 3' -53.5 NC_005259.1 + 4467 0.66 0.853864
Target:  5'- -uAUggGCCAAGGCCaUCGgCgGugGACc -3'
miRNA:   3'- ucUAuaCGGUUCUGG-AGC-GgCugCUG- -5'
23316 3' -53.5 NC_005259.1 + 5711 0.75 0.349931
Target:  5'- -----cGCCAAGGCCagCGCCGgACGGCg -3'
miRNA:   3'- ucuauaCGGUUCUGGa-GCGGC-UGCUG- -5'
23316 3' -53.5 NC_005259.1 + 6417 0.76 0.302245
Target:  5'- uGAUGUgGCCc-GACCUCGCCGAuguCGGCa -3'
miRNA:   3'- uCUAUA-CGGuuCUGGAGCGGCU---GCUG- -5'
23316 3' -53.5 NC_005259.1 + 6937 0.69 0.663487
Target:  5'- -----cGCCuuGAGGCCgagcucgcCGCCGACGGCa -3'
miRNA:   3'- ucuauaCGG--UUCUGGa-------GCGGCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 8406 0.72 0.501027
Target:  5'- -----aGCCGGGccACCUCGCUGGCGAg -3'
miRNA:   3'- ucuauaCGGUUC--UGGAGCGGCUGCUg -5'
23316 3' -53.5 NC_005259.1 + 9548 0.67 0.789804
Target:  5'- gAGAgcUGCCc-GGCCUCGaCCGcguCGGCg -3'
miRNA:   3'- -UCUauACGGuuCUGGAGC-GGCu--GCUG- -5'
23316 3' -53.5 NC_005259.1 + 12140 0.67 0.789804
Target:  5'- cGGGUcUGCUuucuuGAUCacCGCCGACGGCa -3'
miRNA:   3'- -UCUAuACGGuu---CUGGa-GCGGCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 13678 0.68 0.738924
Target:  5'- cGGUGUGCUcguGGACCcgUgGCCGGuCGACc -3'
miRNA:   3'- uCUAUACGGu--UCUGG--AgCGGCU-GCUG- -5'
23316 3' -53.5 NC_005259.1 + 13750 1.11 0.00146
Target:  5'- gAGAUAUGCCAAGACCUCGCCGACGACg -3'
miRNA:   3'- -UCUAUACGGUUCUGGAGCGGCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 16561 0.66 0.862157
Target:  5'- gAGAUcccGCCcaccGGGCagaUCGCCGAgGACa -3'
miRNA:   3'- -UCUAua-CGGu---UCUGg--AGCGGCUgCUG- -5'
23316 3' -53.5 NC_005259.1 + 17332 0.7 0.608493
Target:  5'- aGGGUGUGCCGGucaACgUCGCCGuCGAg -3'
miRNA:   3'- -UCUAUACGGUUc--UGgAGCGGCuGCUg -5'
23316 3' -53.5 NC_005259.1 + 17840 0.66 0.853864
Target:  5'- cGGGUggGCCGAGGCCaCcCCGugGuCa -3'
miRNA:   3'- -UCUAuaCGGUUCUGGaGcGGCugCuG- -5'
23316 3' -53.5 NC_005259.1 + 18315 0.68 0.756597
Target:  5'- cGGUGUGCgacacCGAGGCCggUgcguucguggucgaCGCCGACGGCg -3'
miRNA:   3'- uCUAUACG-----GUUCUGG--A--------------GCGGCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 18489 0.7 0.630496
Target:  5'- -----cGCCGAcGAgCUaCGCCGACGACc -3'
miRNA:   3'- ucuauaCGGUU-CUgGA-GCGGCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 23638 0.73 0.480461
Target:  5'- cGGUGUgGUUucGGCC-CGCCGACGGCg -3'
miRNA:   3'- uCUAUA-CGGuuCUGGaGCGGCUGCUG- -5'
23316 3' -53.5 NC_005259.1 + 23997 0.66 0.85133
Target:  5'- cGGUG-GCCAAGACaCUCgaggacaccacgggGCUGGCGAa -3'
miRNA:   3'- uCUAUaCGGUUCUG-GAG--------------CGGCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.